- Region 'REG00000830'
Cis-regulatory Region
Name
Ci-Zipper -2949/79
Short name
n/a
Region ID
REG00000830
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-06)
Annotator
Clara Degos (2010-07-07)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci-Zipper from -2949bp to +79bp. This region drives notochord expression.
The corresponding construct named p(-3.0 k)zipper/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
1,527,7401,530,767
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,527,740 / 1,530,767] on scaffold KhC11
Sequence found thanks to the primers used in the paper.
Show sequence
Length: 3,028
GAAGAAATGAGCCTGTGGTGCAAAGAAGCGAGAAATCTAAAAGTCAGCATGCTGGACCGT
CCAAGTAAACATAATTATTTGTTTAAGAAATGTTTGACTCTTAAGCTTACAGTTTAAATT
TCAACTTGTATTGAGTTGTTGTATTCAATTAAGATCCGGGTGTATTTGGAAGAAAGGTTA
AAAAAATCTAATCTATATCTTTAAAATATTTTTAGATCTGGTGGCGATGTCTCAAAAGCA
TCAGCAGCCCGTCGTAAGAGACAAGACTCTTCTTCTTCCTCATCATCATCTTCGGGATCA
TCTTCTGGATCTTCATCCGGGTCGTCGGATTCATCCTCAGAGTCTGAGGAAGAAAGAGTC
ACAAAACCTCGCAAATGAAAAACTTTTGTAAAGCAACAGTTTTTAATGCTTGATTTTTCA
GCACTGACTTACCATATTTGACACCAAACTGTAAATGCAGCCAAGGTGTGATGAGATTAT
GTAATAAACTGACATAGTTCTCATTTAATTAGGATTTGTGGTTGATGGAATTATGAAAGC
AGCTGAAATGTAGTTTTGTGTATTTTATGCTAAGAGTAACCAAGCTGCCGCATTTTATCA
AATTTTTGTTTCCCAATGTCACGCTAGTATGTAAATAAATAATTATTTCAGCAAAATTAT
GGACTTTTACTTTTGAAAATACAAATTATAATAAGTTAATTTTAACTTCTGACATCACTG
AAGATAGTTTTAGTTTTAAACCAAATCGTTTGAAATGAACAGACATGTACCATATATATG
GATTGCCTTGTTTTATTCACCTAACCAATATTTATCTGTAATTTTACGTTGTTGACATTT
ACTCCAGTGAAAACAAAATACGTAAGTAGTTATTTTGAGATCGGTCACTTTTGATTATGT
ACAGTTCAGGCGTGGTAGCTTACTGTTTAACGTTTCGCTGAGGCATAAATACTCTGTTAC
TGATTTACTAGTGTCAACAGTACACAAAAAGTAAAGAAGTGAAAAATATACGATTATATA
GAGCTTTTGTAAGGTTTATAGCGGCAACTTTTTGCGTATTATTATAAGACAGCTGTTTAA
ACAAGTTAATCACGCACCACATGCATGTTTAAATATGCAGACACTAATTGCCCTATGGCG
AACAATTATACAATACTTCTAAGAAGTTTGATAATTTAAATAACTCCAAATAAGGAAAGG
GCGTTTTTTACGCACGTTTTTATAATCGCCTACCACTTTACATTCATACTTAAATAGTTC
ACATACCGCAAATCATTAAAATGGTAAGATATATTACTTTTCGTGTGCTGTTCGATGCAG
AAACATGCACGCACCGTTATCGGGGAAAACTCCCCCCAGACGGAACCAACTGACTTCTCG
TCTTGACGTAGGTCACGTGACCGTATACAAAGCGTAGAAAGAACGGGCGCGGCCTGTAAA
ACAAAATCCGAGCCGTCTTGATGTTCGTCTGGTTTGTTTCTTTCAATTAAGCACAGTGCA
AGTTGGATAGGTGGCTGTCGGACCAGTCGAGGATATAATAGTTAATATGATGCAGCTTTT
ACCCTGATAATCGACAGTGCTGAGAACTTAAAACTGTATGGCTGACAAATGCGTCAAAAC
ATATTTTCTGGCGTCACAGGTTGAAATTTAGGGTAATAGTTAAGGGAAAATATCAAAATG
TCGAGCCGACGAACTAAAAAGACGGTTAAAAAGCGCGCCCAGCGTGCAACATCCAATGTC
TTTGCTATGTTCGATCAAGCTCAAATTCAGGAGTTTAAAGAAGCTTTTAACATGATCGAC
CAAAACCGTGATGGATTTGTTGATCACGAAGATTTGAAGGACATGCTGGCTTCATTGGGT
AAGTTGTGTATATGTAGAAGTTCTGTAATGATAAAACATTGACCAAAATTACATACACTT
GTGCTTCTAAAATGCACCAGATTAAAAAGTTTAATTTTTCCTTGTATAGAATATTTAATA
CATAAACTATAGAACGCATTTCTGCCATAAAACACAATTTTTGCATAGTTTTGTTAAGTT
TTTCCAGTTCAGGTACATGTATTGTATTTGATTTTTTTTTGCTAATATGTAATACATTTT
TGAGTTTTTATTCCATTTTTAGGTAAAGAGGTTTCAGATGATTACATTGAGAAAATGTGT
GGGGAAGCCCATGGTCCAATCAACTTTACCATGTTCCTTACAATGTTTGGCGAAAAGTTA
AACGGCACTGACCCTGAGGAAGTTATAAGGAACGCCTTTGCTTGCTTTGATGAAGAAGGC
ACCGGAAAAATTAACGAGGATTATCTCCGAGAACTTCTCACTTGCATGGGTGATCGTTTC
AATGATGATCAAGTGGATGAAATGTACAGAGAAGCTCCAATCAATGCTAAAACTGGTGAC
TTTGACTACATAGAGTTCACAAGGATTCTAAAGCATGGCGCTAAAGAAAAAGATGACATT
TAGATACTATTAATAGTTGTATTCTACTGTCATCTGAATATATAATGAATCGATATTGGC
CGATATAAGTACGATGGTCTGTCTTAAAACCTAGCACTCCTGAAATCAGTTTTTTTTTAA
ATAAAAACTGGTTGTTCTATTATTAAGGACTATGAAATGGTTTTGGCATTTATATAAACT
TTGTTATTGGTGTGTTAACGTTTACTCAGATTTGCCCATTATGTTGTTAGTGTTAGCAAA
ACGTAGAGTGTACTATTTCAACTGCATAATAATAACCATAATTAATCAATTTAATTGGAA
TATGTCTGTAATCGAAACCTAATATAATTGTATTTTTTTGATTTGAAATTTGATGCTGTC
ATTATAAAATAATCATCTGCACTTTTTTTCCTGAACAGTTGTAAATAATTTTTATGCCAC
AAAGTCACACTATGGGGTGATTTGGTATTGCCTTGATTTCAAATGTAACTCTAAAACTTT
GCATTTCAGGAGACTTATTATTATTTTTTGAGTGAGATTTTGAGTTAACTTTTTTCCGAG
TGTTGACTTCAGTACAGAATGGATGACA
