- Region 'REG00000829'
Cis-regulatory Region
Name
Ci-fibrn -977/38
Short name
n/a
Region ID
REG00000829
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-06)
Annotator
Clara Degos (2010-07-06)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci-fibrn from -977bp to +38bp, driving notochord expression.
The corresponding construct is named p(-1.0 kb)fibrn/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-fibrn -2515/38 by deletion
- Ci-fibrn -3016/38 REG00000825 [ regulatory_region (extended_promoter) ]
1,753,0561,754,070
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,753,056 / 1,754,070] on scaffold KhC1
Show sequence
Length: 1,015
TGGACAGCATTATAACCTGCCTTATAGTGTATTGACCCCTGCATGGAAAAAGATGTATAT
GAAAATAGACAAACTGGTACATTTAACGGTAAGTCAACGAAGTGTTAAACTGGTACATTT
AACGGTAAGTCAACGAAGCCGTATAAATAGTCAAACTATAACTAAAAGTGCTCATTCGCA
TACTGCAATAGTTTCAGCAATACGACTGTGGGCATAGCAACTACTGATGTTATAATCTGT
ACTAACCGCTATACCTGCGTTTGCTTTATTAACTACGTAATATACATACTACCTTGTAAG
TTGGTACGAGGTGTATAAACACCCGCGTTATACCGACTGTCATGTTCCGGCCACGCGAGG
ATAAAAAAGTAAGTTACAAGTTATAAGTTATTCCACATTGTACAGTACATGAAGCGTTTA
TATAGAGCGGACTTTACCATCCGTTCAATCCACATTACTGGCTATAAGTTGAGCTTAGCA
TCTTAATACTGATGGCCGCAGGATGTATTGCTGTCTGTACATACAAACCTAATCTTCACC
CGATCTCTGCACATTGTTTACATTAAGTTAAGCCATCTATACAGTTTAAGTTAAAAACTC
AATGTGTTTTTGAAATATTTTAGAATAGCTGACTAGAAATAAATCTGCAATAAAACATAT
CGTTCAAAATATATACCTTGTTTAAAAGCAGCATTTATAAAGGTTTACACTGGTGCTTTT
TTTGCAACACGCCAATTTTTTAAATATATAGGTATAAATTACTTTTTTTTATTCCAAACA
GGCCAGTTCCTAACATTTATAACTACCCAGGCCCTCAATAGTCCAAGCATTCATATGCTC
TACTAACGGGTTGTCGCCAGCTTATATATAGGCCATTTAAAATGTGTCTGTTCAGATCAA
AGTTAGGGCCCAACGAGCCCAAAGCTAAATGCCTAAAGCTCAATATACGTAATTGTTATA
TATAATGCATTGTTTTCTGCCCGCTACACGAAGTGACGTAAAACGCTACAAGCTT
