- Region 'REG00000825'
Cis-regulatory Region
Name
Ci-fibrn -3016/38
Short name
n/a
Region ID
REG00000825
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-05)
Annotator
Clara Degos (2010-07-05)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci-fibrn from -3016bp to +38bp, driving notochord expression.
The corresponding construct is named p(-3.0k)fibrn/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
- Ci-fibrn -3016/38 REG00000825 [ regulatory_region (extended_promoter) ]
1,753,0561,756,109
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,753,056 / 1,756,109] on scaffold KhC1
Sequence found thanks to the primers used in the paper.
Show sequence
Length: 3,054
TGGACAGCATTATAACCTGCCTTATAGTGTATTGACCCCTGCATGGAAAAAGATGTATAT
GAAAATAGACAAACTGGTACATTTAACGGTAAGTCAACGAAGTGTTAAACTGGTACATTT
AACGGTAAGTCAACGAAGCCGTATAAATAGTCAAACTATAACTAAAAGTGCTCATTCGCA
TACTGCAATAGTTTCAGCAATACGACTGTGGGCATAGCAACTACTGATGTTATAATCTGT
ACTAACCGCTATACCTGCGTTTGCTTTATTAACTACGTAATATACATACTACCTTGTAAG
TTGGTACGAGGTGTATAAACACCCGCGTTATACCGACTGTCATGTTCCGGCCACGCGAGG
ATAAAAAAGTAAGTTACAAGTTATAAGTTATTCCACATTGTACAGTACATGAAGCGTTTA
TATAGAGCGGACTTTACCATCCGTTCAATCCACATTACTGGCTATAAGTTGAGCTTAGCA
TCTTAATACTGATGGCCGCAGGATGTATTGCTGTCTGTACATACAAACCTAATCTTCACC
CGATCTCTGCACATTGTTTACATTAAGTTAAGCCATCTATACAGTTTAAGTTAAAAACTC
AATGTGTTTTTGAAATATTTTAGAATAGCTGACTAGAAATAAATCTGCAATAAAACATAT
CGTTCAAAATATATACCTTGTTTAAAAGCAGCATTTATAAAGGTTTACACTGGTGCTTTT
TTTGCAACACGCCAATTTTTTAAATATATAGGTATAAATTACTTTTTTTTATTCCAAACA
GGCCAGTTCCTAACATTTATAACTACCCAGGCCCTCAATAGTCCAAGCATTCATATGCTC
TACTAACGGGTTGTCGCCAGCTTATATATAGGCCATTTAAAATGTGTCTGTTCAGATCAA
AGTTAGGGCCCAACGAGCCCAAAGCTAAATGCCTAAAGCTCAATATACGTAATTGTTATA
TATAATGCATTGTTTTCTGCCCGCTACACGAAGTGACGTAAAACGCTACAAGCTTAATTT
AAACGGAATCAGGTAATCTACATCGGCCTGTGACGCCAATTTCAAACACTGTGGCAAATT
TTTAACCGCCGACACTTTTTCAAATCCGATTTATTTTAAAGAAAGTCGTGCTCAATGTCG
CTTTAAAGTAAACACCATGTATGTATGCTGTATTCATGCACCTCATGCTTTCATACACTG
TCGAGTTATTACATGGTATCTTCTTATACACCGGAGTCTTATGCACTACAATACGAATAT
GTTATACTCACTCCATTACACCAAAATACTCAATAAAACTTTTATATTCCTGCTATACCC
GGCTTACAGTTATTACTATTAAACATTCCCACGCTGTATAAACTTTCTATTAATAACTTT
CCTAATATTCCCCGACCCAGCACTATAGGGAATTGTGATTAACACGACGCCACCGTTTTA
CCACTGTGGCTAAAATAGGAAACCGTAGTTTTGTTGTCATGTTTACGCAAAGTTTGAGCC
GCAAACACGTACATCGACTCTGTGATGTAAGATCGTAATATATTCTTATCAACAATTATG
TAGGAGGGTGTTGTGTCCGAATGTAAATTTTTAGACCTACTTAATTAATATAACATAATG
TTGTATTTAAACGCATAAGTACCATGCTATATTTGGATCATATATCCGAACCTGTGCTCA
TTTTTGAATTTTATACAATAAGTGTTATATATAATATAAAAATACGCATGTGTCAAACAC
GCAATCTCTTGTGCCTTTCCAAATGTCCTGCGCGCAATTTTGCTAAGTTTGACAGTTTTA
CCGCGTGTTTGATTATGCTGCTCTATTCTCCTTATGGCATAGTGAATGCCCGCACTCGAA
ACTTCTAAAGTGAAGCAGAAGAAACTGAAGCCAGGGTTTTAAACCGCGCTGTCCCAACAT
TGAGGTGTCGTGTTATTAGCATAGGGTTGATCAAACTCTAGCCTTGGTGTTACTTACCGC
ATGTCCCAAGTTCATTACGTCAGCGACGTTTGATGTTGACGCTTTCTTTATTGTTTTGAC
TGAGATCTGGCACGCGAGACATCGCATCTACCTGCGACATTAGATTGGCGGTTTTTTGAA
CGTTGTTTACGAATCTTCTTTACAGCGCCGTTGCTCAGTGGTTAGATCGTTTGCAATTTA
GTGGTCACTATAAATGGGTTGTCCAAATTATTAGCCACACATAAAAAAAATTAAACAATA
ATCACCTACAAACTAACGTATACTTAGTTACTCGTAATAGCTGGCAAGAGGTGTATGAAC
GCCCATATTATAACGACTGTCGTTTTCTGGCCACGCAAAGTTAAAGTAAGTTGCACTCTG
CCATAACTGGCGGTCTAAAGTTGTCCAAAAAAGCATTCCCAGCAATTTGCATATGTGGTA
AAGTAGCCGGGCAATGACGTAATAACACGGGTGTTCTGTTTCATACTCGTCGCCGTTTCC
GAGTTACCACGTAGGCTATGTGACTTTTTAGATGATTACTTCTGCCTTTAACGGTTTGCT
ATACAATTTATTGCCTTATTCGTGATTGTTTTAGGCGTGAGACCGGCTCGCCGCGTGTTT
TTGTATTTTGCTTTTTCAAGCGAGTTTGCTATATCGCTGTACAGTGTGGCAATTTGAAGT
AATGAACCAATACCGGCTTATTTAGGTCTGGTATGCTTTACCATATGACCTAACTTCCAC
AGAATAGAATAGTGTATTGCGGTTAGACTTTTCATGCGAAATGTAAAAGGGATGCATCAA
AACGGAGTAAGTAGTTAATAACATTAAAATACCGGTATTTTTGTACAGTAGAGAAATACA
ATTGACTAAAAATGTATGTACTGTATACGCTTTACACGTATATAGCGTATATGTACCCCT
TCGCTTAAAAGTATATACAATTAGCGTAAGCAAATGTTATAACCAAAGAAAACAGTACAT
ATATATGCTGTAAGTATAGTTACTAATGGTATAACGCGTTTGCATGCGTTCTTTAGATGA
GTTTTCGACACGGTTTATCGTCAGCGTCGATGGTGTAACGGTTAGCATTGGTGC
