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CIS-REGULATION

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  1. Region 'REG00000850' > 
  2. Region 'REG00000824'

Cis-regulatory Region

Name

Ci-ERM -1179/76

Short name

n/a

Region ID

REG00000824

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Hiroki Takahashi (2010-07-05)

Annotator

Clara Degos (2010-07-22)

Curator

Delphine Dauga (2010-07-26)

View position in WashU

Description

Region upstream of Ci-ERM from -1179bp to +76bp.

The corresponding construct is named p(-1.2 k)ERM/lacZ in the paper.

Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.

Hierarchy of Regulatory Regions

Modification of Ci-ERM -3052/76 by deletion

Regulated gene(s)

KH2012:KH.C12.129 (EZR; MSN; RDX)

Construct(s) made to test this region

CONS00000787: pCi-ERM -1179/76::LacZ

Show in situ data
Overview of functional TF binding sites in this region

4,853,4894,854,743

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,853,489 / 4,854,743] on scaffold KhC12

Show sequence

Length: 1,255

TTCCAAACATTATTACATCACAGTAAGGACAATATTATCTATGATGTCACAATCACAAAC
AATTACCTGTCGAGTGCTACGCAAACCAACTTAAACACATCCCCTTATAAGGCAATACTT
GTGTATAAGTACGCAGAACATTGTTGCCTGCAACCTTATATGCTAATCTTTATCTACTTC
AACTTAACTTTTAAAACCAATCTCCTTTTACATTTTCAATGAAAACAAACTTAGAGAAGT
CTAAGCTTATAGCAAATTATTTAAAAACCCATTTTGTATCAAGAAAAGTACCTGAAACTC
ATTTTATATCGAGAAAAATATCTAAAACTTTTAAAATATTTTTTTTTTAACCAATTTTTT
TAAAAGGGGGAAAAAATTAATCTAAACCGCATTTAGCAGGTAACGCAATTTGACGCTACT
AGCCTACCCTACAGCACATCTAACTGGGTGTATAACACTGCATTCCTAGAGCACCAATTG
CTCTGCTATACATCAGTGTGGATACAACCTTTTATATTCCCAGAAACCCCAGTACAACTA
TATAGGTTGAACCATGTTTAGCGGGAAATCTAAGGCAACAGTGGTGGTCTATATTAAGGA
GCTTGGACTTTTAAACAGAAGTGACAACGGGGAAACCCAAATAATCTCATTCCAGATACA
TTACCCACAAGTTAGGAGTTAAAGCTGTTACCCGATGACAAGCATTGAACATAGATAGCT
AACAGAGCTTAGCTACACTTGTATGGATCTATGCGCCAAGCGTGTATGAGGAGCATTTGC
TTGATTATCTAAAGCAATAGTATTGAATGCAGGAATCATATTTAATGGGAGTTTACTGTT
ATATTGCTAATTAAAAACCCCAGTTTAATACTTCGGTGACTTTTATTTACTATGGGTTAC
TTCATGGTTACATATGTGGTAAATTGTAAGTGGGAATGAGGTGTATAAAACCAGAACACC
AATGGTATAATTACTATTATTGCTCACCATTCAAAGATAAATAAGTTACATTCATGAATT
TATATTTTTTTGAGATGGGAAAAAGTTGCATTGATATAGGTAAAGTTAACCACTGTGTTT
TAAGTCTTATATAAAAGGTGTGAATTAATCTAATAAGAAGTCACATTACATATTATAAAG
TATAGGAAATTTAGTAATTTAGATGCCTACAGCCTACAGCCTACAGCCTACAGTTATAGT
GATGAAAGATTACAGAGCTAAAATATTTCCGAATTCCCCAAGCACCCACGCATGC

Reference(s)

Takahashi et al. (2010). Regulation of notochord-specific expression of Ci-Bra downstream genes in Ciona intestinalis embryos. Zool. Sci. 27(2):110-8

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