- Region 'REG00000822'
Cis-regulatory Region
Name
Ci-ERM -3052/76
Short name
n/a
Region ID
REG00000822
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-05)
Annotator
Clara Degos (2010-07-19)
Curator
Delphine Dauga (2010-07-26)
Region upstream of Ci-ERM from -3052bp to +76bp, driving notochord expression.
The corresponding construct is named p(-3.0 k)ERM/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
4,853,4894,856,616
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,853,489 / 4,856,616] on scaffold KhC12
Sequence found thanks to the primers used in the paper : Ci-ERM (BamH-R) CGGGATCCATTATTACATCACAGTAAGGAC and Ci-ERM (-3.0 kXba-F) GCTCTAGACTGGTTAACGTGTCTCGCCA.
Show sequence
Length: 3,128
TTCCAAACATTATTACATCACAGTAAGGACAATATTATCTATGATGTCACAATCACAAAC
AATTACCTGTCGAGTGCTACGCAAACCAACTTAAACACATCCCCTTATAAGGCAATACTT
GTGTATAAGTACGCAGAACATTGTTGCCTGCAACCTTATATGCTAATCTTTATCTACTTC
AACTTAACTTTTAAAACCAATCTCCTTTTACATTTTCAATGAAAACAAACTTAGAGAAGT
CTAAGCTTATAGCAAATTATTTAAAAACCCATTTTGTATCAAGAAAAGTACCTGAAACTC
ATTTTATATCGAGAAAAATATCTAAAACTTTTAAAATATTTTTTTTTTAACCAATTTTTT
TAAAAGGGGGAAAAAATTAATCTAAACCGCATTTAGCAGGTAACGCAATTTGACGCTACT
AGCCTACCCTACAGCACATCTAACTGGGTGTATAACACTGCATTCCTAGAGCACCAATTG
CTCTGCTATACATCAGTGTGGATACAACCTTTTATATTCCCAGAAACCCCAGTACAACTA
TATAGGTTGAACCATGTTTAGCGGGAAATCTAAGGCAACAGTGGTGGTCTATATTAAGGA
GCTTGGACTTTTAAACAGAAGTGACAACGGGGAAACCCAAATAATCTCATTCCAGATACA
TTACCCACAAGTTAGGAGTTAAAGCTGTTACCCGATGACAAGCATTGAACATAGATAGCT
AACAGAGCTTAGCTACACTTGTATGGATCTATGCGCCAAGCGTGTATGAGGAGCATTTGC
TTGATTATCTAAAGCAATAGTATTGAATGCAGGAATCATATTTAATGGGAGTTTACTGTT
ATATTGCTAATTAAAAACCCCAGTTTAATACTTCGGTGACTTTTATTTACTATGGGTTAC
TTCATGGTTACATATGTGGTAAATTGTAAGTGGGAATGAGGTGTATAAAACCAGAACACC
AATGGTATAATTACTATTATTGCTCACCATTCAAAGATAAATAAGTTACATTCATGAATT
TATATTTTTTTGAGATGGGAAAAAGTTGCATTGATATAGGTAAAGTTAACCACTGTGTTT
TAAGTCTTATATAAAAGGTGTGAATTAATCTAATAAGAAGTCACATTACATATTATAAAG
TATAGGAAATTTAGTAATTTAGATGCCTACAGCCTACAGCCTACAGCCTACAGTTATAGT
GATGAAAGATTACAGAGCTAAAATATTTCCGAATTCCCCAAGCACCCACGCATGCCTGTA
GACGATTACCGGTATTATAAATATTCAAAACTCGCGTAAATTGCAAACGAAACCAACCCG
TGTTTAAACCGCATTCACATCCGTAGCATAGACCTGGTTACTTTCAACTTTTCATCGCTG
TTATCTGGATTCCTTGCGTGTTAGTTTGTGGTGAAATATGCGGTTATCTGTTAAGGCGTT
TCTCATATAACTACCAGCGTAAAACTTTAATTTGGCATCAGTAGCCACGCTTATAAATCG
CTTTTGTTTTTCGGAGATAAAATTTACGTTATGGCATTGTTATGTATTATATTTTGGTTG
CGCGTAAGAATCAATTGATTTGAAAAGGGTTGTGCTGTATATGTAAAGCTTTGTATTTGA
TAGTTATAATACGGGTATGCGGTGCGTGTATTGTAGTAGTTTGGTGTTACTAATGTAATA
ATACGCAGATGCTAAAGCTATGTTAGTTTCAGCGTGGGTAAAGTAGTTCTTAAATAACAA
AACACACGTTTAACGTTACGGATAACGGCCCAACTAAACGTATGTAAGTCGGATGTATTA
TGGGTATTAGACTTAATTCTATATCGTGTATTAGCGACCATGTAATACGCCTCCGTAACT
AGTGCTTGTACATCAAACATGTGTAATTAACTTTCGTACACCACGCGTATAGATAAGTAG
GGGTGACGTCATTTTGTTGGCGCAACGCATGAAAGCGGGTTTTAATATAAAATACATTTT
TTTATCCCTTCGAAAGCGGTTACGAAAATCGTATTATTAAACGAGGTAGAGAACGAAATC
AACAGCAAAACACGCTATGGGTAAAAGGTATAGAAAGAGTCAGTTAAAAATCGTGGCTGT
TGAACCCAAAATCTGCAGACCATGAAAAACTGCATTCGTGCGTTGACGTTTTAACGGTGT
GCGAGCATACGACACGTAAGCATACTGCAATGCTGCAAGAAATTCTTACAAATTATGACG
ACCACTCGTCTACGTCACAGGGAGAAATAGTTTTTAGTTTTAAGCAAACTATACGTTGAA
GAAACCTTCGTTAGGTTACAAATTATTTTAGTTTATACGTTAGGGCTATAATTCTTCACT
AGCACCAACGGTACACTATACTTTAAAAACAACATTTTCTGGAATTTTAGTAAAACATAT
TTGTCTTAGCGGGAAGCATCTCTAAACAACCTAACTATAACCTTACGAAAATACACATTT
ACAACGTAACCGTTATATTACGTTCACATTGAACTTAAACCAACTAATGCTACAATGCAT
TGGCTTCTACCAAGCCTCATGATGCGATGCTCATACATTATTCACCCCTGCTGTGCGTTC
TATACAAGCAGCACGACGTCCGTTATCGATTCGAGAATTCCCAACTGTGACGTCATTAAT
CTCGCGACGTAGTGTGACGTAACAATCAAATAATCGACGTCGATGTGATGACGTGTTAAT
TACGAAACAATGTTGGTTTGGCAAATAAGGAAATTAGTTTAGTAGACTTTGATGTAAAGA
CAAGTTGAAAAATAAGTTAATTACGAGGTATTTTATCAAGGTAATTAATCATAAGAAATG
TTACATGAAGACTGTATTTTACGGTAGGTGTTACCGTGTTACATACCAATACAGAATGTG
GAAAAAAATGTCCAATTACGGAGTATTGCTGAACTACGACTTTGTATTTTATGTTTCTTG
TACTTCATGAACATAACGTGAACTTTTATTTACCTCGTATTGGTAAAACGTTAACATCGA
ACATTAAATCCTTTCGTTAGAAAAAGTATTTGTATTTTAACATAAGTTAAAGTTATGTAT
AAGAATATTTCCAAAGGGAAGTAATGTATTTTTAAACGTGTGGCGAGACACGTTAACCAG
GGCACGTA
