- Region 'REG00000820'
Cis-regulatory Region
Name
Ci-Noto8 -1148/-218
Short name
n/a
Region ID
REG00000820
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-05)
Annotator
Clara Degos (2010-07-05)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci-Noto8 from -1148bp to -218bp, driving notochord expression.
The corresponding construct is named p(-0.8 k)Noto8/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-Noto8 -1353/-218 by deletion
1,073,0641,073,993
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,073,064 / 1,073,993] on scaffold KhC11
Coordinates were based on the first exon of the KH transcript.
Show sequence
Length: 930
CTTGAGACATATTTCCTTTGCAGCGTCCTTCTTATAATATATGCTACGGTGTATTTGATG
AATAACTGCAAAAACACTAGAGCGACCAATGACGCTACCATTTTATATGACAACAACGAG
AGGAAGTAACGTCATAGCGCTGAAACATCCGCAACATTCCACTGTGGTGTTAAAACCAGA
GTGTGATTTTTAAACATTAGATTTAGTGAACCAAGTTATAAAAGCTTTTCGCGTAAATTG
TCTTGCAACAACTGTCATTTAGGTTGGTTTACGATAGGAAGTTCTTATAATTCATATGCT
TATTTGGCATTTGCACAATTATAGAGCTTACAAATTATAATAATAAGGACGACTTTGGTG
GTAGCAGTTGTAGTCTCCACTAAGTATAGCTTTGCAATTGTTCGAGAAATAATAGTGTCG
TCGTTGCGGTGTGTTATACGTTCAAATTAATCCAGTGCGTACTTTTGATTTGTATTGTTT
GTTAGTATCGTAAAACTAAAATACAAGAATTACAATACAAAAAAAATGCAAATATGCCAT
GTAACAAGAGCAACAGAAAGTAAAATATATGTAGAATTGTGAAGCATTACAGCAGGTATA
TCAAACAAATTTAGTAGGGTGAATATGGGACACCTTTGTGTTTCATTTTATCGTCCCATT
TGGTAGTAAACAAAGAACATTCAAAGAATTATAAAACCGTATCCTTTGGGCTCCCATAGA
CCGTGTTGTAATATGTTTAAAACTCGATCAGGATATTTGGATATTACGTGTTAAAGGTGT
CCCATCTTCCCCCACCCTACTATATATAGGTTATGCATTCACATTTATTTGACAGACAGT
AATTCGTGCTAACTAGGTTACATTAGGTTAGCTGAACACAATTGTGTAACTGGAAGATCA
AATGCCGGGGTAAGATTGACCAATCCATGG
