- Region 'REG00000816'
Cis-regulatory Region
Name
Ci-Noto8 -3248/-218
Short name
n/a
Region ID
REG00000816
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-02)
Annotator
Clara Degos (2010-07-02)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci-Noto8 from -3248bp to -218bp, driving notochord expression.
The corresponding construct is named p(-3.0 k)Noto8/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
1,070,9651,073,994
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,070,965 / 1,073,994] on scaffold KhC11
Sequence from JGI, found thanks to the primers used in the paper. Coordinates were based on the first exon of the KH transcript.
Show sequence
Length: 3,030
CCTTGAGACATATTTCCTTTGCAGCGTCCTTCTTATAATATATGCTACGGTGTATTTGAT
GAATAACTGCAAAAACACTAGAGCGACCAATGACGCTACCATTTTATATGACAACAACGA
GAGGAAGTAACGTCATAGCGCTGAAACATCCGCAACATTCCACTGTGGTGTTAAAACCAG
AGTGTGATTTTTAAACATTAGATTTAGTGAACCAAGTTATAAAAGCTTTTCGCGTAAATT
GTCTTGCAACAACTGTCATTTAGGTTGGTTTACGATAGGAAGTTCTTATAATTCATATGC
TTATTTGGCATTTGCACAATTATAGAGCTTACAAATTATAATAATAAGGACGACTTTGGT
GGTAGCAGTTGTAGTCTCCACTAAGTATAGCTTTGCAATTGTTCGAGAAATAATAGTGTC
GTCGTTGCGGTGTGTTATACGTTCAAATTAATCCAGTGCGTACTTTTGATTTGTATTGTT
TGTTAGTATCGTAAAACTAAAATACAAGAATTACAATACAAAAAAAATGCAAATATGCCA
TGTAACAAGAGCAACAGAAAGTAAAATATATGTAGAATTGTGAAGCATTACAGCAGGTAT
ATCAAACAAATTTAGTAGGGTGAATATGGGACACCTTTGTGTTTCATTTTATCGTCCCAT
TTGGTAGTAAACAAAGAACATTCAAAGAATTATAAAACCGTATCCTTTGGGCTCCCATAG
ACCGTGTTGTAATATGTTTAAAACTCGATCAGGATATTTGGATATTACGTGTTAAAGGTG
TCCCATCTTCCCCCACCCTACTATATATAGGTTATGCATTCACATTTATTTGACAGACAG
TAATTCGTGCTAACTAGGTTACATTAGGTTAGCTGAACACAATTGTGTAACTGGAAGATC
AAATGCCGGGGTAAGATTGACCAATCCATGGTCGGAGGTGGTTGAACTTGGTGGTCTAAT
GCTAAGCCTCAAACCGGTGTCGGTCGGATCTCCCCTATACGGAGTACCAGGGTGCCAATC
TCCATTATACCCAGGATTTCCATTGCTTTGTGTTACTGTATCAGCCTGTGGATAAATATA
TATAACAAGTTCTTAACTCGGGAAATTAACTTTTCGTGTCTCCATTAATTGTCGACTATT
GTGCAGTGTCTTAAACTATTAAAAAATTTGGTGGCTTGTGGGCGTGTAAGTTAGGCTATT
TAGAAGGAGAAAGACATGTCTCCGCTTGTTATTCCCTATGAGTTTTGCAAACTCACTCTC
GAAAATGTACAAATTCACTTACAGAATGGAATGTAGCAGGTTAAGTCTAGTATTTCAAAC
TTACCACTGTGTTGTAACTTGAACCGAGCCAAATATCAGCATGGGTAGCTGGTCTGATGG
GGAATACGATGGTTTGTCGACAGTAGTTATAAACTATGTCGTACATCGCTTTATCCACAA
TATCCACCAATCGACCGCCGCTTTCGGCGCAAAATTTTATTGCTTGAGTGAGGTTTAATT
CTTTTACAACTGAAGCACCAGCAGGGAACCAAAGGATTATATTCTGATAAACCATTCCTT
TACCTGTAAGAAAAGATAAATAAGATATAGTAGGGTGGGGAAAGATGGGACACCTTTAGC
ACATAATATCTAAATATCCTGATCGTGTTTTAAACAATTAACAACGGTCTAAAGGAGTTG
TGAAGGCATAGTTTTATAATTCTTTGAATTTTCTTTCTTTACTACCAAATTGGACAGGAA
AATAGAATGAACAGGTGTCCCATCTTCCCCCACCCTACTATAGATATCACTGGTGATCAC
AAAATCGTTTTACGTTCGTACCCATATACAGGGACCAATCCACAGTTATCATTGTATCCC
ACCCTGTAGCTTGATCAACTCGCTCCAATTCAATCATAAAGTGTCCTCTGTTAATTTCAA
TGATGGCCACGTTGAACTTGTGGGGTAAAGATGGGTCGCTCGGTCTTGCTGTTGCGTGAA
CGTAATCTGGAGCTTTAGGCAAGCACATCATGTAGCCGATCTTTGCTTTTGTTTTAGCAT
TTGCCGAAAACGAAGATAATTCAAAACTCCCTCCGCTGGTCAGCGGTTTATCTGTTGATG
GATTTGTTTACTAGATATATATACTTACACTTTAATGATATATACTTATACTAACTTAAA
CGTAGACAACTTACTTGAATTGACCTCGCTTATAACTACAAGCAACATGAACCAAATGCA
CTTCATAATGACCAATGTTAATAAACCTAACCCCACAGAAATCTGTGTTGTGTTAAAGTG
GGTAGTTAATTAAAACAGCTTAGCGAACAATGCTGTCTGAACAATAAATAATGAATGCAT
ACCACAGGTATTGGATTGGTGTTTTGGCACGTTTTATGCAACACATCTTATAGTAGCAGT
ATATAGCAAACAGATTTACTTTATTTGGGGCCGTATTTTAAGATTAAAATACATCATGAT
TTACCCATGATATGTATAGTATTAACTAAACTTCTGCTCATTTAAATCAACCAAACTCTA
ACGAATACACAATCTAAACAACATGAGAGTCAAACTATATTGAACGGGCACGTATTATTA
CAAAAATAATTTATGTAGAAGATGCGGAAAAAACGGTACAACCTTCTGCCGAACTGTGAC
CTCAAAATATTAGCCTGGTCGTTCTGTATTTCAGTCAAAATATTGTTCTGCTGTTGTCCC
GAACATTCGTTTCCATGTTTTACAAAATGCGGGTCATGATTAAATAGAAAAAAATACACG
TGCATGTTGTCATCATACATTTACTTGGAACCGCAAAAACATATGTTTTGGTATTTAGGT
TAAAATCAACAGCTAATGCTATATATTGCTAAACAACGTAATTGCTGAAACCACAGATAC
ATAAACATATAGTGGGGTGGGGGAAGATGGGACACTTTTTAACTCTATTTACTCGTCCCA
GTTAGTAGTAAACAAAGAACATTCAAAGAATTATAATATATCCTTACGACTTCCATGAAC
CGTTGTTAATTGTTTAAAACACGATCAGTG
