- Region 'REG00000814'
Cis-regulatory Region
Name
Ci-Noto1 -407/41
Short name
n/a
Region ID
REG00000814
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-02)
Annotator
Clara Degos (2010-07-19)
Curator
Delphine Dauga (2010-07-26)
Region upstream of Ci-Noto1 from -407bp to +41bp. This region is required for Notochord expression.
The corresponding construct is named "p(-0.5k)Noto1/lacZ" in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-Noto1 -1006/41 by deletion
513,733514,180
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [513,733 / 514,180] on scaffold KhL20
Sequence found thanks to the primers used in the paper : Ci-Noto1 (BamH-R)
CGGGATCCATAACTTTGGATTATTTGT and Ci-Noto1 (-0.5 kHind-F)
CCCAAGCTTGACCAGTTGGCAGAAAG. Coordinates are based on the first exon of the KH transcript.
Show sequence
Length: 448
AAGCTCTAAGGCAGACGTTTGCATATATGTGCATAAGGTGTATGGTACTGTGGGCTAAGA
TACCGTTAGCAGATGATAATAAATATTCACTATTTTCTAATCGGGTTTTTAACAATTAAC
AACGCTCTTTAAGACTCGAGATGATACGAATATATATTTCTGTAAAGATTTTCTTGTTTA
CTATTAAATGGGTCGAAAAAAGAGAACGAAAAACTGACCCATCTTACCCCAACCTGATAG
ATATTTCTTTGTTTGTTCTTTTTACATCCAGGCAAGTAACGCTGTAGTGTAAAAGTCGTT
TAAAAAAAATAAACAAAGAAATATCTACGCTAAAAACGCTGGGTGTATATAGATATGATG
GGCAACAAAACCCAATCAAATACGTTCATTTAAAATGTTCTTAGTAGACAGGTAAACTAT
TACAAATAATCCAAAATTATGAAGTTGT
