- Region 'REG00000813'
Cis-regulatory Region
Name
Ci-Noto1 -1006/41
Short name
n/a
Region ID
REG00000813
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-02)
Annotator
Clara Degos (2010-07-19)
Curator
Delphine Dauga (2010-07-26)
Region upstream of Ci-Noto1 from -1006bp to +41bp. This region is required for notochord expression.
The corresponding construct is named "p(-1.0k)Noto1/lacZ" in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-Noto1 -1595/41 by deletion
513,134514,180
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [513,134 / 514,180] on scaffold KhL20
Sequence found thanks to the primers : Ci-Noto1 (BamH-R)
CGGGATCCATAACTTTGGATTATTTGT and Ci-Noto1 (-1.0 kHind-F)
CCCAAGCTTGAACAAACAGAGGCCATA. Coordinates are based on the first exon of the KH transcript.
Show sequence
Length: 1,047
CTTGCATATGAACAAACAGAGGCCATGTATAGTTCCCATGTTGTTTACTTTAACTTCACT
GTGGTAACAATCACTGTTTATTATCAAATAATTGCATTTCATTACCTTTAAAAGGGTGCA
ATGCCGTCATAATGCATATTAATTGCAAATAATTATAACAAAGGGTCATAATTACGACGT
CATGTAGTCAATTATGACGAAATAAAACACAAAATGTTTTTTTTTTTTGCAAAGTTAGTT
AAAAGAACACGAAAAAACGTGACAAAAAGATGATTCGGCGACAGAACGCGATTTGATTAA
TGACAATGTATCGCGCCACCCGACTGTAACGTCACAGATATCATTTAGAAGACACGACTT
ATTTATGACGTAACAGATACGCTGGGTGTGGTGAAACAATGGCTATTATTTGGTCATAAA
TATTTGAGTGACCTACAGGCACTTAGGTGCCAAAAACAAGAGCAATTAGTTGAGGCATGA
ACGCGAAAACGCTTTCTGTTGCAAGTGACCAGTTGACGCAAAGAGAGACAGATAAACGGA
CAGGAACAGACAGTGTATTAAGAACTTGATTTAACTGATGTGGAACTCCTTTAGTGAGAA
AGCTCTAAGGCAGACGTTTGCATATATGTGCATAAGGTGTATGGTACTGTGGGCTAAGAT
ACCGTTAGCAGATGATAATAAATATTCACTATTTTCTAATCGGGTTTTTAACAATTAACA
ACGCTCTTTAAGACTCGAGATGATACGAATATATATTTCTGTAAAGATTTTCTTGTTTAC
TATTAAATGGGTCGAAAAAAGAGAACGAAAAACTGACCCATCTTACCCCAACCTGATAGA
TATTTCTTTGTTTGTTCTTTTTACATCCAGGCAAGTAACGCTGTAGTGTAAAAGTCGTTT
AAAAAAAATAAACAAAGAAATATCTACGCTAAAAACGCTGGGTGTATATAGATATGATGG
GCAACAAAACCCAATCAAATACGTTCATTTAAAATGTTCTTAGTAGACAGGTAAACTATT
ACAAATAATCCAAAATTATGAAGTTGT
