- Region 'REG00000811'
Cis-regulatory Region
Name
Ci-Noto1 -2078/41
Short name
n/a
Region ID
REG00000811
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-02)
Annotator
Clara Degos (2010-07-22)
Curator
Delphine Dauga (2010-07-26)
Region upstream of Ci-Noto1 from -2078bp to +41bp. This region is required for notochord expression.
The corresponding construct is named "p(-2.0k)Noto1/lacZ" in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-Noto1 -2364/41 by deletion
512,062514,180
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [512,062 / 514,180] on scaffold KhL20
Sequence found thanks to the primers : Ci-Noto1 (BamH-R) CGGGATCCATAACTTTGGATTATTTGT
and Ci-Noto1 (-2.0 kHind-F)
CCCAAGCTCCACGGTCGAGTTGCTGAA. Coordinates are based on the first exon of the KH transcript.
Show sequence
Length: 2,119
GCTATTGCAGTGTGTGGATAAGCAGACATGACTTTTGGTTGGTTTGATCATTTATATCCT
CGTGGGTGGGAACTTAAGTGACTTATCCATGGTTGCCACTCCCATGCCCACAGTCGAGTT
GCTGAAACTATTGCAGTGTGTGGATAAGCAGACATGACTTTAGGGGGAACCTGAGCAACT
TTTAAGTCTCTTTCACAGCTACATTCAATAAACTCCACTAAAAAATCTCTCGCTGCATAA
AATACAAATACCCTTTAACGAATATACATATAATACCCTTCATACGCCACAAGAACATCT
ACTGTATACTGATAACATACCACGAATGCAAATTCATTCTGAAAACATTTCATCCAAAAT
GCTATACTTGCACCTGTAAACACATTCTACGCATATTATAACCTCTAATCTCAAGCTGGA
GCCGAACAGCTGATATACAGCAAACTCCCATAACTGGATAACGAAGATTAAAATTACTTG
AAAGTCTTCCTGTAGTATGGTTACAATGCAAATGCGGTTTCTTATCTTGTGCATTACAAG
ATTACTTCGATGTTAGGAAGGAAGTCGATGTTTTTTTGTTCTTTCACAGCGTTAAACGCC
GCTTAAAAAGAACAAACAAGGAAATATCTACGCTGACCTGCGCTGAACAACGCTGGGTGT
AGATATTACTTTGTTCGTTCTTTTTTACACCGAGGCGAGTTACGCTGTAGTGTAAACGTC
GCTTAAAAGAACAAACAAAGAAATATCTACGCTGACCTGCGCTGAACAACGCTGGGTGTA
GATATTACTTTGTTCGTTCTTTTTACACCGAGGCGAGTTACGCTGTAGTGTAAACGTCGC
TTAAAAGAACAAACAAAGAAATATCTACGCTGACCTGCGCTGAACAACGCTGGGTGTAGA
TATTACTTTGTTCGTTCTTTTTACACCGAGGCGAGTTACGCTGTAGTGTAAACGTCGCTT
AAATATTTTTTTGACGAGCTATGGGCTTTTCTGTGTGAACGCCAAAAACCACCGGATTGG
TTAATATTTAAATACATTTATGACAAAACAACAGCTTTGTTAAACAACAAGGCTTGCATA
TGAACAAACAGAGGCCATGTATAGTTCCCATGTTGTTTACTTTAACTTCACTGTGGTAAC
AATCACTGTTTATTATCAAATAATTGCATTTCATTACCTTTAAAAGGGTGCAATGCCGTC
ATAATGCATATTAATTGCAAATAATTATAACAAAGGGTCATAATTACGACGTCATGTAGT
CAATTATGACGAAATAAAACACAAAATGTTTTTTTTTTTTGCAAAGTTAGTTAAAAGAAC
ACGAAAAAACGTGACAAAAAGATGATTCGGCGACAGAACGCGATTTGATTAATGACAATG
TATCGCGCCACCCGACTGTAACGTCACAGATATCATTTAGAAGACACGACTTATTTATGA
CGTAACAGATACGCTGGGTGTGGTGAAACAATGGCTATTATTTGGTCATAAATATTTGAG
TGACCTACAGGCACTTAGGTGCCAAAAACAAGAGCAATTAGTTGAGGCATGAACGCGAAA
ACGCTTTCTGTTGCAAGTGACCAGTTGACGCAAAGAGAGACAGATAAACGGACAGGAACA
GACAGTGTATTAAGAACTTGATTTAACTGATGTGGAACTCCTTTAGTGAGAAAGCTCTAA
GGCAGACGTTTGCATATATGTGCATAAGGTGTATGGTACTGTGGGCTAAGATACCGTTAG
CAGATGATAATAAATATTCACTATTTTCTAATCGGGTTTTTAACAATTAACAACGCTCTT
TAAGACTCGAGATGATACGAATATATATTTCTGTAAAGATTTTCTTGTTTACTATTAAAT
GGGTCGAAAAAAGAGAACGAAAAACTGACCCATCTTACCCCAACCTGATAGATATTTCTT
TGTTTGTTCTTTTTACATCCAGGCAAGTAACGCTGTAGTGTAAAAGTCGTTTAAAAAAAA
TAAACAAAGAAATATCTACGCTAAAAACGCTGGGTGTATATAGATATGATGGGCAACAAA
ACCCAATCAAATACGTTCATTTAAAATGTTCTTAGTAGACAGGTAAACTATTACAAATAA
TCCAAAATTATGAAGTTGT
