- Region 'REG00000810'
Cis-regulatory Region
Name
Ci-Noto1 -2364/41
Short name
n/a
Region ID
REG00000810
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-02)
Annotator
Clara Degos (2010-07-19)
Curator
Delphine Dauga (2010-07-23)
Region upstream of Ci-Noto1 from -2364bp to +41bp. This region is required for notochord expression.
The corresponding construct is named "p(-2.2k)Noto1/lacZ" in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
511,776514,180
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [511,776 / 514,180] on scaffold KhL20
Sequence found thanks to the primers used in the paper : Ci-Noto1 (BamH-R) CGGGATCCATAACTTTGGATTATTTGT and
Ci-Noto1 (-2.2 kHind-F) CCCAAGCTTCAGTGTAAGTAGCTGCTTTG.
Coordinates are based on the first exon of the KH transcript.
Show sequence
Length: 2,405
TTAACACCACAGTGTAAGTACGTTCTTTGTAAGTCCAAGTCCAAAAGGCCGTGTAAGTAA
TGCATTACTTATTGGGAATAAAGGCGAACTGCAGTTTGTGGTTGCTGTTAAAATACAAAG
CAAAACATTGCGGCAGATTTTAACTCTTACTCAGTTCCTGGTTAATTATATATGTACTAA
CTGGCGCGCTCGCCTCGTAATTACTGAGTTTATAACGTTATGTAAACGTGAACTTGAGTG
ACTTATCCATGGTTGCGACTCTTATGCCCACGGTCGAGTTGCTGAAGCTATTGCAGTGTG
TGGATAAGCAGACATGACTTTTGGTTGGTTTGATCATTTATATCCTCGTGGGTGGGAACT
TAAGTGACTTATCCATGGTTGCCACTCCCATGCCCACAGTCGAGTTGCTGAAACTATTGC
AGTGTGTGGATAAGCAGACATGACTTTAGGGGGAACCTGAGCAACTTTTAAGTCTCTTTC
ACAGCTACATTCAATAAACTCCACTAAAAAATCTCTCGCTGCATAAAATACAAATACCCT
TTAACGAATATACATATAATACCCTTCATACGCCACAAGAACATCTACTGTATACTGATA
ACATACCACGAATGCAAATTCATTCTGAAAACATTTCATCCAAAATGCTATACTTGCACC
TGTAAACACATTCTACGCATATTATAACCTCTAATCTCAAGCTGGAGCCGAACAGCTGAT
ATACAGCAAACTCCCATAACTGGATAACGAAGATTAAAATTACTTGAAAGTCTTCCTGTA
GTATGGTTACAATGCAAATGCGGTTTCTTATCTTGTGCATTACAAGATTACTTCGATGTT
AGGAAGGAAGTCGATGTTTTTTTGTTCTTTCACAGCGTTAAACGCCGCTTAAAAAGAACA
AACAAGGAAATATCTACGCTGACCTGCGCTGAACAACGCTGGGTGTAGATATTACTTTGT
TCGTTCTTTTTTACACCGAGGCGAGTTACGCTGTAGTGTAAACGTCGCTTAAAAGAACAA
ACAAAGAAATATCTACGCTGACCTGCGCTGAACAACGCTGGGTGTAGATATTACTTTGTT
CGTTCTTTTTACACCGAGGCGAGTTACGCTGTAGTGTAAACGTCGCTTAAAAGAACAAAC
AAAGAAATATCTACGCTGACCTGCGCTGAACAACGCTGGGTGTAGATATTACTTTGTTCG
TTCTTTTTACACCGAGGCGAGTTACGCTGTAGTGTAAACGTCGCTTAAATATTTTTTTGA
CGAGCTATGGGCTTTTCTGTGTGAACGCCAAAAACCACCGGATTGGTTAATATTTAAATA
CATTTATGACAAAACAACAGCTTTGTTAAACAACAAGGCTTGCATATGAACAAACAGAGG
CCATGTATAGTTCCCATGTTGTTTACTTTAACTTCACTGTGGTAACAATCACTGTTTATT
ATCAAATAATTGCATTTCATTACCTTTAAAAGGGTGCAATGCCGTCATAATGCATATTAA
TTGCAAATAATTATAACAAAGGGTCATAATTACGACGTCATGTAGTCAATTATGACGAAA
TAAAACACAAAATGTTTTTTTTTTTTGCAAAGTTAGTTAAAAGAACACGAAAAAACGTGA
CAAAAAGATGATTCGGCGACAGAACGCGATTTGATTAATGACAATGTATCGCGCCACCCG
ACTGTAACGTCACAGATATCATTTAGAAGACACGACTTATTTATGACGTAACAGATACGC
TGGGTGTGGTGAAACAATGGCTATTATTTGGTCATAAATATTTGAGTGACCTACAGGCAC
TTAGGTGCCAAAAACAAGAGCAATTAGTTGAGGCATGAACGCGAAAACGCTTTCTGTTGC
AAGTGACCAGTTGACGCAAAGAGAGACAGATAAACGGACAGGAACAGACAGTGTATTAAG
AACTTGATTTAACTGATGTGGAACTCCTTTAGTGAGAAAGCTCTAAGGCAGACGTTTGCA
TATATGTGCATAAGGTGTATGGTACTGTGGGCTAAGATACCGTTAGCAGATGATAATAAA
TATTCACTATTTTCTAATCGGGTTTTTAACAATTAACAACGCTCTTTAAGACTCGAGATG
ATACGAATATATATTTCTGTAAAGATTTTCTTGTTTACTATTAAATGGGTCGAAAAAAGA
GAACGAAAAACTGACCCATCTTACCCCAACCTGATAGATATTTCTTTGTTTGTTCTTTTT
ACATCCAGGCAAGTAACGCTGTAGTGTAAAAGTCGTTTAAAAAAAATAAACAAAGAAATA
TCTACGCTAAAAACGCTGGGTGTATATAGATATGATGGGCAACAAAACCCAATCAAATAC
GTTCATTTAAAATGTTCTTAGTAGACAGGTAAACTATTACAAATAATCCAAAATTATGAA
GTTGT
