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CIS-REGULATION

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  1. Region 'REG00000776'

Cis-regulatory Region

Name

Ci-Nut1 -1119/94

Short name

n/a

Region ID

REG00000776

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2010-06-28)

Annotator

Clara Degos (2010-06-29)

Curator

Delphine Dauga (2011-08-10)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.


This region is the root of the Ci-Nut1 analysis (meaning includes all regions tested), but it was not itself experimentally tested.

Sequence deduced from articles and ANISEED database.


Transcription start site is based on the start of the first exon of the KH transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C14.4 (ADRB2; P2RY12; RGR)

Construct(s) made to test this region
n/a
Overview of functional TF binding sites in this region

1,413,7951,415,006

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,413,795 / 1,415,006] on scaffold KhC14

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 1,213

NATAATACTATTACGCATTAAACTAAAACATAATCTGTTCTAGGAATCTTTTAACTCGGC
GAGCCTGTGTTTTCTTTTTAGACTATAATACCCTCCAATAACAGGGTAAGATGCATGCGA
AAAAAACGATTGATTTTGTGCATATAAAATATTTATAATAGTCTGGGGTTATGTGAGTGA
AATAGCTGGTTATATCTAACTGCAGCCGGAAATACGTGCTCTTTGCAGAAAGGAAAATCC
ATTTCTCGTGTATTGCAACATACGGTATAGTAGGTTTAGATGGGTCACCTTTACCACAAA
TAACATCCAAATATCCTGAGCATGTTTTAAACATTTAACAACGGTATATGTGGAAGTTGC
GAGAATACGGTTTGATAATTCATTAAATATGCTTTGTTTACTACAAAATGGGACGGGAAA
ATAAAATAAAAAGGTGTCCTATCTTCCCCCATCCTACTATATATATCATATTTTCTAATC
CTGTTTTAGCAATTAACAACGCTCGTTTAAAGTCGTGGGTATATGCGGTTACATAAATTT
AAAAATATTATTTGTTTACTTCAAAATAGAACGATAAAAGCGTGTATAAACATGTTGTAT
CATCTTACCCCATCCTGCTACAAATATAAACAATTTCATGATAAGAAAATGCACATGTTT
GTTATGCCGCGTGTTGTGTACAGTTCTGGTTAGGATTTCAGAACACACACACAGAAAATC
GGTCGTGCCTGCTGCTGCAACTAGTGCGACACCTCAATAATTATGAGACTGCCTCAGTGC
ATTCCTATCAACGTGTTTTGCGCTCGTATCACCCAAAAAGCGTGCCTCGTGCTGCCTACA
CGGTGTGGCTACATAAAAACGTCGCGTGTTTTACTGTTCCAGTTCGTTTTTGTATTCGTG
GAAATAGGTTCGCATTTTTTATTAAGAAAGAGTTTGGTTTTCGAGGTCACTGAATTGCAA
TTAGAAGGCATTTAATAGTAGCACTAGGACACTCTATTCACTGCGTTGTCTAAATCCATG
CGAAACAACAAAATAAGTCGCAAGACATGCTGTGCGTGTATTGTTTTTTTGAAACCCCGT
CGCTTTGTGAAAATCTGGTTGATTATTTTTTCGTACCAGTTTTACAGTTTAAATACGACT
GTGCTTCAGTTTTTGTTAGTATTGAGTTGTACACTATATCAACAACATGGAAATTGATTT
TGGATTTGCAAGA

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

Shimai et al. (2010). Upstream regulatory sequences required for specific gene expression in the ascidian neural tube. Zool. Sci. 27(2):76-83

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