Aniseed - Cis-regulation

Region 'REG00000712'

Cis-regulatory Region

Name

Ci-Nodal -2260/-1732

Short name

n/a

Region ID

REG00000712

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

no_output

Author

Delphine Dauga (2010-06-10)

Annotator

Delphine Dauga (2010-06-10)

Curator

Delphine Dauga (2010-06-10)

View position in WashU

Description

Root region, untested.

Hierarchy of Regulatory Regions

Ci-Nodal -2260/-1732 REG00000712 [ no_output ]
- Ci-Nodal -1918/-1771 REG00000227 [ regulatory_region (enhancer) ]
  - Nodal -1918/-1772bp Fox2 mutated REG00000231 [ regulatory_region (enhancer) ]
- Ci-Nodal -2260/-2078 REG00000310 [ regulatory_region (enhancer) ]

Regulated gene(s)

KH2012:KH.L106.16 (BMP10; GDF2; NODAL)

Construct(s) made to test this region

n/a

Overview of functional TF binding sites in this region

33,00933,536

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [33,009 / 33,536] on scaffold KhL106

Sequence from JGI V1.0

Show sequence

Length: 528

TACCAAAGTTGACGCAAGTTATGTCAAACATAGATAGCAACAATGCCATCTTATCTACGT
AACTAGGAAACATAATCATTTATAAAACTTTCTATCTACTTAAACGGAAACCTTTTGTTA
CGTCACGGTGACGTATTATCTGACGTCACGAACTCGAGCCAATCGACAAAATTTATCTCC
GGATTTCATAAAATATTGAACATGACGTCACAATTATCGAATATACTGTGACGTAACTAT
GGTGTCTGGCGATGACGATTTTGTTCAATTCATTGTAGCGAAGTATCAAGACTCGAGGAT
TAAAGTTTCACGCGAAATTAGAAACGACATTTCACACAATAGTTCTCCGTTCTACGTTCG
AATGTTCGAAACGCGCGACGACAAATGGTCTATTATCATTGAAGACACTCGCTAATAATC
GTAACAGACAGCGAGAAAATTATAAGGACATTACTATTGTTTCAATCCATTGTTACGCAT
GTGCGATGCAACAATGGCTCTTTGTTGAAAACGTGACGTCGAATTCGA

Reference(s)