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CIS-REGULATION

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  1. Region 'REG00000704'

Cis-regulatory Region

Name

Ci-Eya enhancer +2719/+3958

Short name

n/a

Region ID

REG00000704

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Maximilian Haeussler (2010-06-04)

Annotator

Clara Degos (2010-06-22)

Curator

Delphine Dauga (2011-08-08)

View position in WashU

Description

Region in Ci-Eya, containing 2 GATTA sites and putative site for Otx. This region drives expression in the neurohypophysis primordium, anterior epidermis, palps and mesenchyme.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C7.703 (EYA1; EYA2; EYA4)

Construct(s) made to test this region

CONS00000674: pCi-Eya enhancer::LacZ

Show in situ data
Overview of functional TF binding sites in this region

6,052,3136,053,551

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [6,052,313 / 6,053,551] on scaffold KhC7

Sequance was found thanks to the coordinates in the supplementary data in the paper.

Show sequence

Length: 1,239

TTAAGCTCAATTACCGAATTAATTGTTCTTTCAATTGTAATCATGTTCTACAATTCTAAA
ATCGATATTTTCTCGAAATCTTTAAAACTTCCCGCCGAACTTTCTAATTGTGTTGTCATA
ATCGCATAAGCCAACGTCATAATACGAATTGTTGAAATACAATGTTGTGAATGGATTATC
ACCTGACCGTGTGATTATGACGCATTAACTTTAATTGTTTCGTCATAATCCTCTAAGTGC
GATCACAAATTTCAGCTTCCGTGACGTCATAATGCGGTATGCACAATTTGTATTGTTTAA
AAATAAAGTCGGTTGTCAGTTGAATTGTGACGCTAATGGATTTAAAGATCTGGAATTGGT
TGACAATTAAAATTCCTGCAAGCGTTCATGCGCGAAAAGTAATTTTATTCGAAAATCGAA
ACTCATTGTTTCTAACATACGTCACAATAGGGATGTACACGTAACAATGTGAATCATGAT
AAACTAATTGTTATCTCACAGCGCCGATCGCTCGCATGAAACTTACCCAAGGTCAGACCC
CGAAATATCTCTATAGGTTCCCAGGGTGTCGGATTCCTCCCAAAGTTTTCACTGTAAACT
CGCGGCCCCAGCAATTTAGGGGCGAACCCCCAACCCCCACTCACCCCTAATTACCCACTG
TTTGCACACTTTAACGCGAGTCTGAATCACGACGCAAAAACGCCATTTTGGCGATGAATT
TTTCCCAGATTATGACGTCACACTAACTATTGTTTTGAAACACAAGCGCGGGTTAGACAC
GCTCACTGACCGCGGTTTTTAAAAGTTTTTTAATTTAACAAAAAATTGCAAGAATTTTCG
AAACCGGAAACGTTTTGACAATCAGCGCGCGATACCTCACTGTGACATCATAATCGTTTT
TTTTAACAAACCAAACTTCGCGAAAATCGCTTCCAAAAGATTTTTAAATCCAGATTTGTC
GCATTATGACGTCATAATGGCCTTTTTACGCCGAAATCGTCGCTTTCGCGAAAATCGCGG
CGACACCTTCGCGTTTCGCATGACTAGCCACGCGTAAAATAAGCTCTCCGTAGAGATTCG
CTTGTTGTTCAGATAGACCATTGTTAGAGCGTTGTCGCGTAACAAACGATTGTTCTAAAC
AGGTAGTTCTAGTAAAAAAATTAGCTGATTGTGACGTAATAATAGCGATTGTCAAAAAGT
TCGAGATGGAAATATATGATTGTTAGCATGGAAGCTTTA

Reference(s)

Haeussler et al. (2010). A cis-regulatory signature for chordate anterior neuroectodermal genes. PLoS Genet. 6(4):e1000912

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