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CIS-REGULATION

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  1. Region 'REG00000683'

Cis-regulatory Region

Name

Ci-AChE -1649/1

Short name

n/a

Region ID

REG00000683

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Yumiko Kataoka (2010-06-01)

Annotator

Delphine Dauga (2010-06-01)

Curator

Delphine Dauga (2010-06-16)

View position in WashU

Description

Coordinates are based on the KH transcript model (coordinates in the paper : -1631bp).

Hierarchy of Regulatory Regions

Modification of Ci-AChE -2152/1 by deletion

Regulated gene(s)

KH2012:KH.C12.218 (ACHE; BCHE; NLGN4X)

Construct(s) made to test this region

CONS00000693: Ci-AChE -1649/1

Show in situ data
Overview of functional TF binding sites in this region

5,022,8725,024,520

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [5,022,872 / 5,024,520] on scaffold KhC12

Sequence from JGI V1.0

Show sequence

Length: 1,649

TCTGTTCAAGAAAATAGAATAAAGTGTTATTAATTTACATATTTCTCTGAAAATTAAATA
TTAATCTACATGCAGTGTATAGGGCTCAATACATGGTAGAGTGGTAGGAAATGAGACACT
CTTTCAATCTGTTTTTTTCGTCCCACTTGGTAGTAAACAAAGAAAATGCAAAGAGTTATA
AAACCGTATCATCACGACTCCGATAGACTGTTGTTAGTTGTTTAAAACACGATCAGGATA
TTACGAGCTAAAGGTGTCCCATCTTCCCCCACCCTACTATACCAATAGAAAAAGTTCAAA
AATTGACTATTCCTTTTTCGAAGGTCGGGTTAAAATGACCGACAAGGATAATTAGCCTAA
CAGGTTTACAGAGAGTCGTGTCTATTGTTTAAATCATCCACACCGGTAAAATACACGACC
TTGCACAATAGGGGTAAATAGCGATACCTTGTTATTGTTGAAACTTAACACCGAAATGAA
CAAATTGATTGTAATTTACTTCCTCCTTTAAAAACCATTTTAATTACGTAATTTTATATT
TAACAACGAAAATTTTATGGCAAATACCAGACATTCCATCGCAGTTTAAGTTTTTATCTC
ACATTTCCTATATTCTAATATCTAAAATATATTCCTATATTCTAATATCTAATATATACA
ATTTCAGAGTATATACAAATTTTCAAATACAGTCATTGTAGCGTACCGTTAAGTTTCTAT
TTTAAATTTCTTAAATTCTTTTATCAACAGTTTTATGACAAACGCCACACATTGCTATGC
TGTCAAGTTTATACTTTACTTCGTACACCAAACGCCTCGCCACTTTAACTCAACCGCGAA
ACAACCGATCCATTCCAACCAAACTCTGTAATTCACTTTTAGTTTTTGAACTGCCTGTCG
GCCTAAATTTGCGATTTTGTTTGATAACAACAAATTTCTTATATTAGTCTGCAAACCCGT
GACCGACCTAAAGCTGCCAATTTCTGCAAGAGCGTGGTTTATATATCAGTGCTTGTGGAA
CGGGAGACGGGGCTAATTGGCCTAAACTGAAAATTGAATTGACGCGGCCATGCAGGGGAT
CGATAATCAGTAAAAGCATCCGTCGTTTCTATCTGCCCAGCTGGGATACTGAAATTTTTA
CAAAGTGGAACGAAAACGAATTTGAACACACGAGGATGAATTATTGAAGCAGCACGCCTA
ATGACAAGCCTCGTGAAGGTAAAGTTGTAGTTGGATTAAACCAATCAAGGCTATACCTGG
TACTCTCAAACTATTGATTCGACAACATTGATTCAAAACCTATATCTCTGAGTGCTACAA
TTACTTAGATTACATCACCACACGTATAGCTGACCTGCTACCATGGAAAGATATATATAA
CTACACAGCAACTCCGTCCCTACATTAATCAACACTCCACGCTGCTACCGTAATATAACC
TGCGTTTCCTGCAATGCTTCTGTTCTCTGCTCAACCCTTTACACTATACAGCGGGCGACA
TTGCCACTATCTACCTTATAGATTGCGAACTATCACAACAAGACTGTGTCTTGGGAATCA
AGCGTCCGCAACGCTCTCGTAGTAGAGGCGAACTTACGCTGCTTTCTCAACGCTACAACT
TTATCCACGAAAGAAAAAGGAGAAAGGCA

Reference(s)

Kataoka et al. (2009). Mechanism of DNA replication-dependent transcriptional activation of the acetylcholinesterase gene in the Ciona intestinalis embryo. Dev. Growth Differ. 51(9):841-50

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