Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-AChE -2152/1

Short name

n/a

Region ID

REG00000680

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yumiko Kataoka (2010-05-31)

Annotator

Delphine Dauga (2010-05-31)

Curator

Delphine Dauga (2010-06-14)

View position in WashU

Description

Coordinates are based on the KH transcript model (coordinates in the paper : -2139bp).

Hierarchy of Regulatory Regions

Ci-AChE -2152/1 REG00000680 [ regulatory_region (extended_promoter) ]
- Ci-AChE -1649/1 REG00000683 [ inactive_region ]

Regulated gene(s)

KH2012:KH.C12.218 (ACHE; BCHE; NLGN4X)

Construct(s) made to test this region

CONS00000691: Ci-AChE -2152/1

Show in situ data

Overview of functional TF binding sites in this region

5,022,8725,025,024

	Motif Name	Binding Factor(s)	Sequence	Position in Region
1	bHLH	n/a	cagctg	[5,024,547 / 5,024,552]
2	T-Box	n/a	aatgacacca	[5,024,557 / 5,024,566]
3	ZnF_(C2H2)	n/a	cgccgggcgtc	[5,024,621 / 5,024,631]
4	bHLH	n/a	catttg	[5,024,705 / 5,024,710]
5	bHLH	n/a	catctg	[5,024,737 / 5,024,742]
6	bHLH	n/a	catatg	[5,024,967 / 5,024,972]
7	bHLH	n/a	catttg	[5,024,998 / 5,025,003]

Sequence

Aniseed Coordinates: [5,022,872 / 5,025,024] on scaffold KhC12

Sequence from JGI V1.0

Show sequence

Length: 2,153

TCTGTTCAAGAAAATAGAATAAAGTGTTATTAATTTACATATTTCTCTGAAAATTAAATA
TTAATCTACATGCAGTGTATAGGGCTCAATACATGGTAGAGTGGTAGGAAATGAGACACT
CTTTCAATCTGTTTTTTTCGTCCCACTTGGTAGTAAACAAAGAAAATGCAAAGAGTTATA
AAACCGTATCATCACGACTCCGATAGACTGTTGTTAGTTGTTTAAAACACGATCAGGATA
TTACGAGCTAAAGGTGTCCCATCTTCCCCCACCCTACTATACCAATAGAAAAAGTTCAAA
AATTGACTATTCCTTTTTCGAAGGTCGGGTTAAAATGACCGACAAGGATAATTAGCCTAA
CAGGTTTACAGAGAGTCGTGTCTATTGTTTAAATCATCCACACCGGTAAAATACACGACC
TTGCACAATAGGGGTAAATAGCGATACCTTGTTATTGTTGAAACTTAACACCGAAATGAA
CAAATTGATTGTAATTTACTTCCTCCTTTAAAAACCATTTTAATTACGTAATTTTATATT
TAACAACGAAAATTTTATGGCAAATACCAGACATTCCATCGCAGTTTAAGTTTTTATCTC
ACATTTCCTATATTCTAATATCTAAAATATATTCCTATATTCTAATATCTAATATATACA
ATTTCAGAGTATATACAAATTTTCAAATACAGTCATTGTAGCGTACCGTTAAGTTTCTAT
TTTAAATTTCTTAAATTCTTTTATCAACAGTTTTATGACAAACGCCACACATTGCTATGC
TGTCAAGTTTATACTTTACTTCGTACACCAAACGCCTCGCCACTTTAACTCAACCGCGAA
ACAACCGATCCATTCCAACCAAACTCTGTAATTCACTTTTAGTTTTTGAACTGCCTGTCG
GCCTAAATTTGCGATTTTGTTTGATAACAACAAATTTCTTATATTAGTCTGCAAACCCGT
GACCGACCTAAAGCTGCCAATTTCTGCAAGAGCGTGGTTTATATATCAGTGCTTGTGGAA
CGGGAGACGGGGCTAATTGGCCTAAACTGAAAATTGAATTGACGCGGCCATGCAGGGGAT
CGATAATCAGTAAAAGCATCCGTCGTTTCTATCTGCCCAGCTGGGATACTGAAATTTTTA
CAAAGTGGAACGAAAACGAATTTGAACACACGAGGATGAATTATTGAAGCAGCACGCCTA
ATGACAAGCCTCGTGAAGGTAAAGTTGTAGTTGGATTAAACCAATCAAGGCTATACCTGG
TACTCTCAAACTATTGATTCGACAACATTGATTCAAAACCTATATCTCTGAGTGCTACAA
TTACTTAGATTACATCACCACACGTATAGCTGACCTGCTACCATGGAAAGATATATATAA
CTACACAGCAACTCCGTCCCTACATTAATCAACACTCCACGCTGCTACCGTAATATAACC
TGCGTTTCCTGCAATGCTTCTGTTCTCTGCTCAACCCTTTACACTATACAGCGGGCGACA
TTGCCACTATCTACCTTATAGATTGCGAACTATCACAACAAGACTGTGTCTTGGGAATCA
AGCGTCCGCAACGCTCTCGTAGTAGAGGCGAACTTACGCTGCTTTCTCAACGCTACAACT
TTATCCACGAAAGAAAAAGGAGAAAGGCACTCGCGACACAAGGTGACGACGCGCACAGCT
GAAGGAATGACACCACGACCAACTTTTGACATCAGGACGTATTAACTTATTAAGACTTTG
AACTTTTCACGCCGGGCGTCGAGCTAAATATAATTTATGGTTCAAACGATCGCCGTATTA
TGTGATTTATTTACAGAGACGCCCACCGCAAACCATTTGATAATGAAGCGAGACGGTTAT
GAAAACATCTGCCGTTTAAAATGACATAGTCTTTGCCGATTATGGTCACCACCATGTATT
TAGGTGAATTACACTGGTTTTATGCAGAGCCAATTATACCTAAGGCTACCATTAGTTATT
TGCGATAAATGCGGTTTCAGCCAATGTTAATTACATGACGCAAATACTATTATATTCCCA
CTGCGGCGCAAAACAGTCCGTTAGGTGACGCTGCGGAGTCGTGACAAATAAACAGCATAT
GATATATCTTAATCTGATTCGCCACACATTTGTTTGTGTAAGATAACTTAAAA

Reference(s)

Kataoka et al. (2009). Mechanism of DNA replication-dependent transcriptional activation of the acetylcholinesterase gene in the Ciona intestinalis embryo. Dev. Growth Differ. 51(9):841-50