- Region 'REG00000669'
Cis-regulatory Region
Name
Ci-RhoD 565/989 FoxF1 mutated
Short name
n/a
Region ID
REG00000669
Status
Curated
Origin
engineered region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Lionel Christiaen (2010-04-27)
Annotator
Clara Degos (2010-07-12)
Curator
Delphine Dauga (2010-05-05)
Region from +565bp to +989 of the RhoD/F gene, containing the second exon. The first FoxF site was mutated.
Be careful, coordinates in the paper are different from ANISEED coordinates. We took the KH transcript model as reference.
Coordinates in the paper : +498/+922
Modification of Ci-RhoD 565/989 by substitution
- Ci-RhoD -3406/1048 REG00000650 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -3406/601 REG00000651 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -2606/1049 REG00000655 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -1299/1049 REG00000656 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -1005/1048 REG00000657 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -645/1049 REG00000658 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -441/1049 REG00000659 [ regulatory_region (extended_promoter) ]
- Ci-RhoD 228/989 REG00000660 [ regulatory_region (enhancer) ]
- Ci-RhoD 448/990 REG00000664 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 REG00000661 [ regulatory_region (enhancer) ]
- Ci-RhoD 647/989 REG00000662 [ inactive_region ]
- Ci-RhoD 565/989 FoxF1 mutated REG00000669 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF2 mutated REG00000670 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF3 mutated REG00000671 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF4 mutated REG00000672 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF2/3 mutated REG00000673 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF2/4 mutated REG00000674 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF3/4 mutated REG00000675 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF2/3/4 mutated REG00000676 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 Ets1/2-1 mutated REG00000677 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 Ets1/2-2 mutated REG00000678 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 Ets1/2-1-2 mutated REG00000679 [ regulatory_region (enhancer) ]
- Ci-RhoD 448/835 REG00000665 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 REG00000661 [ regulatory_region (enhancer) ]
- Ci-RhoD 228/835 REG00000666 [ inactive_region ]
- Ci-RhoD 448/990 REG00000664 [ regulatory_region (enhancer) ]
- Ci-RhoD 228/989 REG00000660 [ regulatory_region (enhancer) ]
- Ci-RhoD -441/1049 REG00000659 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -645/1049 REG00000658 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -1005/1048 REG00000657 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -1299/1049 REG00000656 [ regulatory_region (extended_promoter) ]
7,847,8147,848,237
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | Fox | n/a | TGTTTAT | [707 / 713] | |
| 2 | Ets | n/a | TGGAAG | [754 / 759] | |
| 3 | Ets | n/a | AGGATC | [796 / 801] | |
| 4 | Fox | n/a | TGTTTAT | [896 / 902] | |
| 5 | Fox | n/a | TGTTTGT | [925 / 931] |
Aniseed Coordinates: [7,847,814 / 7,848,237] on scaffold KhC1
The fisr FoxF site was mutated (TGTTTGA -> TGGTTGA).
Transcription start site is based on the start of the first exon of the KH transcript model.
Show sequence
Length: 424
ACTAAATTTAATTAGCAACCCGCTGTTGTTCAAAGGTGTACACGCCCACGGTGGTTGAGA
ATTACAGCAGAGAGGTGGAATTAAATCGAAAGAAGGCGGTGCTAACATTGTGGGATACGG
CGGGTATATATTAGTACATACGTGTTTATGCAAGACATCGTAGGCTTGTTGACTTAGTTT
CGGTTAGCATGGAAGTGTAGTCTATGTTCTACGTGGGTTATGTTCTTGTCGAGGATCTGG
GATTAGGGCTAAATTCAGCCTATTATTACCACAACATTCAGACTGCTTTTGTAGGTCCAA
ATGTAACATATGACTAGTGTGTTCTGATGTGTGTTTATAATACAATAAACTAGCGCAAAC
TGTTTGTCCCATTATGTTTAGTCATATAGGTCATATGAGAGTAAATGAAGTGTAAACCAA
ATGT
