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CIS-REGULATION

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  1. Region 'REG00000668'

Cis-regulatory Region

Name

Ci-RhoD 448/576

Short name

n/a

Region ID

REG00000668

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Lionel Christiaen (2010-04-25)

Annotator

Clara Degos (2010-04-25)

Curator

Delphine Dauga (2010-05-05)

View position in WashU

Description

Region from +448bp to +576 of the RhoD/F gene, containing the second exon, but all the regularoty FoxF and Ets1/2 site were absent.



Be careful, coordinates in the paper are different from ANISEED coordinates. We took the KH transcript model as reference.

Coordinates in the paper : +380/+508

Hierarchy of Regulatory Regions

Modification of Ci-RhoD 448/835 by deletion

Regulated gene(s)

KH2012:KH.C1.129 (RHOA; RHOB; RHOF)

Construct(s) made to test this region

CONS00000648: pCi-RhoD 448/576 bpFOG::LacZ

Show in situ data
Overview of functional TF binding sites in this region

7,848,2287,848,355

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [7,848,228 / 7,848,355] on scaffold KhC1

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 128

CCACCATACTATATATGACAGTCCGTATATATACTAGGGCGAGCAGGATAATTGGATAAT
ATGTGCTAAAGGAATCCCATATCTTCCTTAACAGTACTATTTGGTATAGTTTGCTTATAC
TAAATTTA

Reference(s)

Christiaen et al. (2008). The transcription/migration interface in heart precursors of Ciona intestinalis. Science 320(5881):1349-52

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