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CIS-REGULATION

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  1. Clone 'ma149k19' > 
  2. Clone 'cicl026g02' > 
  3. Clone 'csga093b01' > 
  4. Clone 'csef039h12' > 
  5. Region 'REG00000663'

Cis-regulatory Region

Name

Ci-RhoD 819/989

Short name

n/a

Region ID

REG00000663

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Lionel Christiaen (2010-04-25)

Annotator

Clara Degos (2010-04-25)

Curator

Delphine Dauga (2010-05-05)

View position in WashU

Description

Region from +819bp to +989 of the RhoD/F gene, containing the second exon, but the first, and second FoxF regulatory sites were absent and also the two Ets sites.



Be careful, coordinates in the paper are different from ANISEED coordinates. We took the KH transcript model as reference.

Coordinates in the paper : +752/+922

Hierarchy of Regulatory Regions

Modification of Ci-RhoD 647/989 by deletion

Regulated gene(s)

KH2012:KH.C1.129 (RHOA; RHOB; RHOF)

Construct(s) made to test this region

CONS00000650: pCi-RhoD 819/989 bpFOG::Lac2

Show in situ data
Overview of functional TF binding sites in this region

7,847,8147,847,983

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 Fox n/a TGTTTAT [896 / 902]
2 Fox n/a TGTTTGT [925 / 931]

Sequence

Aniseed Coordinates: [7,847,814 / 7,847,983] on scaffold KhC1

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 170


TCAGCCTATTATTACCACAACATTCAGACTGCTTTTGTAGGTCCAAATGTAACATATGAC
TAGTGTGTTCTGATGTGTGTTTATAATACAATAAACTAGCGCAAACTGTTTGTCCCATTA
TGTTTAGTCATATAGGTCATATGAGAGTAAATGAAGTGTAAACCAAATGT

Reference(s)

Christiaen et al. (2008). The transcription/migration interface in heart precursors of Ciona intestinalis. Science 320(5881):1349-52

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