- Region 'REG00000660'
Cis-regulatory Region
Name
Ci-RhoD 228/989
Short name
n/a
Region ID
REG00000660
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Lionel Christiaen (2010-04-25)
Annotator
Clara Degos (2010-04-25)
Curator
Delphine Dauga (2010-05-05)
Region from +228bp to +989bp of the RhoD/F gene, containing the second exon.
Be careful, coordinates in the paper are different from ANISEED coordinates. We took the KH transcript model as reference.
Coordinates in the paper : -161/+922
Modification of Ci-RhoD -441/1049 by deletion
- Ci-RhoD -3406/1048 REG00000650 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -3406/601 REG00000651 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -2606/1049 REG00000655 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -1299/1049 REG00000656 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -1005/1048 REG00000657 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -645/1049 REG00000658 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -441/1049 REG00000659 [ regulatory_region (extended_promoter) ]
- Ci-RhoD 228/989 REG00000660 [ regulatory_region (enhancer) ]
- Ci-RhoD 448/990 REG00000664 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 REG00000661 [ regulatory_region (enhancer) ]
- Ci-RhoD 647/989 REG00000662 [ inactive_region ]
- Ci-RhoD 565/989 FoxF1 mutated REG00000669 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF2 mutated REG00000670 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF3 mutated REG00000671 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF4 mutated REG00000672 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF2/3 mutated REG00000673 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF2/4 mutated REG00000674 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF3/4 mutated REG00000675 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF2/3/4 mutated REG00000676 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 Ets1/2-1 mutated REG00000677 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 Ets1/2-2 mutated REG00000678 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 Ets1/2-1-2 mutated REG00000679 [ regulatory_region (enhancer) ]
- Ci-RhoD 448/835 REG00000665 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 REG00000661 [ regulatory_region (enhancer) ]
- Ci-RhoD 228/835 REG00000666 [ inactive_region ]
- Ci-RhoD 448/990 REG00000664 [ regulatory_region (enhancer) ]
- Ci-RhoD 228/989 REG00000660 [ regulatory_region (enhancer) ]
- Ci-RhoD -441/1049 REG00000659 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -645/1049 REG00000658 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -1005/1048 REG00000657 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -1299/1049 REG00000656 [ regulatory_region (extended_promoter) ]
7,847,8147,848,574
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | Fox | n/a | TGTTTGA | [616 / 622] | |
| 2 | Fox | n/a | TGTTTAT | [707 / 713] | |
| 3 | Ets | n/a | TGGAAG | [754 / 759] | |
| 4 | Ets | n/a | AGGATC | [796 / 801] | |
| 5 | Fox | n/a | TGTTTAT | [896 / 902] | |
| 6 | Fox | n/a | TGTTTGT | [925 / 931] |
Aniseed Coordinates: [7,847,814 / 7,848,574] on scaffold KhC1
Transcription start site is based on the start of the first exon of the KH transcript model.
Show sequence
Length: 761
TTTTGTATAGTTGTCAGTTTCAATACAAATATAGTGGGATGGGGAAAGATGGGACAACTT
TAACACCTAATATCCAAATATTCTGGTGGTGTTTTAAAGAATAAACAATGGTCTACGCCC
TACGGGGTCGTAAGGATACGGTTTTATGATTCTTTGTATGTTCTTTGTTTACTACCAAAT
GGGACGAGAAAATCGAATGAAAAGGTGTCCCATCTCCCCCCACCATACTATATATGACAG
TCCGTATATATACTAGGGCGAGCAGGATAATTGGATAATATGTGCTAAAGGAATCCCATA
TCTTCCTTAACAGTACTATTTGGTATAGTTTGCTTATACTAAATTTAATTAGCAACCCGC
TGTTGTTCAAAGGTGTACACGCCCACGGTGTTTGAGAATTACAGCAGAGAGGTGGAATTA
AATCGAAAGAAGGCGGTGCTAACATTGTGGGATACGGCGGGTATATATTAGTACATACGT
GTTTATGCAAGACATCGTAGGCTTGTTGACTTAGTTTCGGTTAGCATGGAAGTGTAGTCT
ATGTTCTACGTGGGTTATGTTCTTGTCGAGGATCTGGGATTAGGGCTAAATTCAGCCTAT
TATTACCACAACATTCAGACTGCTTTTGTAGGTCCAAATGTAACATATGACTAGTGTGTT
CTGATGTGTGTTTATAATACAATAAACTAGCGCAAACTGTTTGTCCCATTATGTTTAGTC
ATATAGGTCATATGAGAGTAAATGAAGTGTAAACCAAATGT
