Cis-regulatory Region
Name
Ci-paraxis -239/-99
Short name
n/a
Region ID
REG00000639
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Albert Erives (2010-04-13)
Annotator
Clara Degos (2010-07-12)
Curator
Delphine Dauga (2010-04-13)
Coordinates are based on KH transcript model (same as in the paper).
Construct name in the paper :
Ci-paraxis 239 bp ->FKHD-lacZ
18,94119,081
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | bHLH | n/a | CAACTG | [18,941 / 18,946] | |
| 2 | T-Box | n/a | ACGTGAGAG | [18,952 / 18,960] | |
| 3 | T-Box | n/a | ATTGACACCG | [19,025 / 19,034] | |
| 4 | bHLH | n/a | CTCACGTG | [19,074 / 19,081] |
Aniseed Coordinates: [18,941 / 19,081] on scaffold KhS781
The sequence was found in the publication and blasted against JGI V1.0.
Show sequence
Length: 140
CAACTGGTAACACGTGAGAGTGGTTTGTGACGTAACAACAAACTCGAGATGAATCCCCTT
GTCGATAGTGACGTCATAATAATGATTGACACCGCGTTCTATTCGTCACGCTCGTGAGTT
CAAGACAGCTGACTCACGTG
