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CIS-REGULATION

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  1. Region 'REG00000637'

Cis-regulatory Region

Name

Ci-glyt-II -1233/31

Short name

n/a

Region ID

REG00000637

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2010-01-18)

Annotator

Delphine Dauga (2010-01-18)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.


Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-glyt-II -1546/45 by deletion

Regulated gene(s)

KH2012:KH.C1.870 (SLC6A14; SLC6A5; SLC6A7)

Construct(s) made to test this region

CONS00000606: pCi-glyt-II -1233/31::EGFP

Show in situ data
Overview of functional TF binding sites in this region

4,051,0194,052,282

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,051,019 / 4,052,282] on scaffold KhC1

Sequence from JGI V1.0

Show sequence

Length: 1,264

AACTAACTAAGTAGTAAACTAGTTTTGTGTTTGTTTTACCTAATAAATTTATACCCAATA
CTGCAAATAAAATATGTAGCTAACACAAGATGTCATTCTCTTTTGAATAAGAGACTGACG
ATGTCATTTATGCGAAATATATATCCTCAGTTATACTAATGATTGGACTTTTTCCCTGAA
ATATATTTTCTCTTTTATGCTATTGATGACATTTTGTCTGTTCTACGTTTTCCTTGCACT
AAATCTTTATTGTATTTTCAATCAAGAGGGGAAATCAGAGAAATACTTTTTAAAATTATA
TGTAGCAGGGTGGGGAAAGATGGGACACCCTTTTATTCTATTTTTCGCCTCATTTGCTAT
ACAAAACAAAGAACATTCCAAGAATATATTTAGATATTGTAGTGTGCTAAAGGTGTCAAG
TCTTCCCCTACACTATACTGTATATAAAGTTTACGAGGCAAAGAAACTAGTACAGTCTGG
TGATTTCGATAGCTTTACTATAATTTATTAACCAAAATTAACAAGGATTTTTAAAATATC
CCATCTTAACCCGCTTGTTTTCAAAGCGCTAAAATTACACCTGGTGTGCGAATCGCTAAA
TAACTCTACGTGTATACTTCTTTGAAGTGTTGTCAATTAAAAACATTATGATAGTAAAAA
TGTGTGTATAGTATCACACAAAATCCATGTATTTTGAATCATGTGGTGTGGACTTTGAAA
TACTGGTCATTATATTTTAAAGGGTTTCATCTTATCCTATACCCTACTGTAGATTTCGTA
TCGTTTGAATTTATAAAGAAAACGTAAATAAGTAATTTACAAACGTTAGTTTGTTAAAGG
TTTACCAAGGAGCGCTTGTTTCTGTTTTCCAACAATAGGATTGAAACGATTTTTATGACA
GAACTATAAAAGCTCTTGTGAACACTTGAATGCTGGAGGAGAAACTTCGGGTAGAAGGTT
TTCTGCTATTCACAATTTAATGATTCGTTTTAGCGACTTATAGCCCGCGGGAAGGCCACT
TGACGCACCGACGGCTCAAAAAGAAAAAAATATTTCTTTTGTAAAGATAAATGTAAAATG
GCTTTGAGCGAATCGCGATAAATTAGAATTTCATTTATGGGCGTTGGTCTGCAGAGTGTA
TTTTAGGTGTAGTGGCGTTTATCAAGTTAACTTTACCCATAGGGACAAGCAAACTGTATT
GATTTGTTTGTATTTATTTACAGTATAAATAATATAGGATTAAAAAGATCTACAAAGTGG
ACGT

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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