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CIS-REGULATION

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  1. Region 'REG00000636'

Cis-regulatory Region

Name

Ci-glyt-I -2091/-100

Short name

n/a

Region ID

REG00000636

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2010-01-18)

Annotator

Delphine Dauga (2010-01-18)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.


Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-glyt-I -2092/-120 by deletion

Regulated gene(s)

KH2012:KH.C1.870 (SLC6A14; SLC6A5; SLC6A7)

Construct(s) made to test this region

CONS00000605: pCi-glyt-I -2091/-100::Kaede

Show in situ data
Overview of functional TF binding sites in this region

4,057,0314,059,021

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,057,031 / 4,059,021] on scaffold KhC1

Sequence from JGI V1.0

Show sequence

Length: 1,991

ATCGTTCAGTTCTTCGTGTTTAATATTAAATAATTTTTTGTGTTTAATTCTGAATCTTTT
TTTCTGGTAAAAAACTTTAGCTTTGTGTTGTTACATCTAACAAGGGTGTAGGAGTTTGCT
AAAACTGCCAATAAAAAATTTAATGTAAATAAATAAACCATTTAGCTTGTGTGTGTTTTG
TGTTACCATATGTTATTTTTATACAAGTTTGGTTACTTCGTGATAGACCTTAGTTATATC
CAATTAACTACTTACTGGAACACACCTCAAACGTGGGGTGTATAATTAAACATACAAGTT
GAGTTGTACAAATTATAATGTAGAAAAGTAGGGGAGAGTGAGACACTAAAACACATATTG
TCTCCTGTAATAAAAACATATGACGGTGAATGAATGTAACTTACTTTATCCTCGCGTGGC
CGGACAACGACAGTCGTTAACACAATTGCTACAACCCAGTGGTCACTAAAGGGTTGTCAA
AAATATTAGCTATGCTTAAAAAAACCACCAAATAAAAAATCACCCACAAAGTAACATACA
CAGTAATTCGTAAGCTGGCGCGAGGTGCACACCCGTGTTATAACGATTTCATTCATTCAT
TCATTCATTCATTCATTCATTCATTCATTCAAATGGGGTATAAACAAGGAGGTTCTAGGC
TATACCCCCAGGCGTTTTCCCACCGGCTATTCCCGGGGAAAACAGCCGGGGCGGAAATAG
CCGGGGGGGAATAACCGGCAGGAAATAGTCACGGGGAGAAATAGCCGGGGGGGATAGTCT
TGGGGTGGAAATAGCCGCAGGGGAATAGTCACGGGGGAAAGTAGCCGGGGGGAAATAGTC
GTTGGGGGAAATTCGTCCGGGAGAAATGGTCATTGGGAAGAATTAGCCGGAGGGAATAGT
CTTGGGGGGAAATAGCCGGAGCGCAATAGTCACGGGGGGGAAATGGCCGGAGGGAAATAG
TCATTGAGATGAATAGTCATTGGGGGGAATTAGCCGGGGGAAATAGCCGGGCGGGAAATA
GACGGTTACGAAACAAGGAATAGGCAGGGGTCAACATGGGTACAAAAAGGAATAAAAATA
TGCCGTTTTAAAGTTCTTTATATAAATTGACACGACAAAGAAACTATAGCACAGGCGGTT
AATTAAACTGTCCCGTATTACCCTACTGTGTTTTCGAATTTGTAAAATTTCACCTGTTGT
GTGAATCGCTAAATAACTCCTCGTGTGTTTTGATATATTTCTATGAATTGTTGTCAATTA
ACAAAGGAATGATAGTACTAATTCGTGATATAGTAGGATGGGGGCCCCTGTTCGTTCTAT
ATTTTCTCGTCAAATTTGGTAGTAAACTAAGAACATTCAAAGAATTTAAAACCGCATCCT
TACAACTTTCATATATCCTTGGTAATCGTTTAAAACATGATCAGGATATGTGGATATTAT
ATGCTAAAGGTGTCCTATCTTCCCCAACCCCACCATATCAACCGAAAAAACGTTATATAT
TTTAATTTGGGAGATACTGGGCAATATGTGCTTAAGTGTCCCATCTTTCCTCACCCCATT
ATAGAAAGAATTGATATTGTCAGAACATCATTAAGTTACAGGAAAGTTATGGGAATCTAT
AAAAAGTTGATCTTCACAAATTGTATTTTGGCACACTGTATTTGGCATAAGCCACTTCTC
ATAACTCACCGTATGTGGCGTTTGACTTACAAAATTACAAAGTGGGATAAAGTGATTACC
CGCTTTTCCTCAGGTCCCGCTTTCTCCCACCCTAATGCTGCACAGATTAAGAGTAATTCA
ATCGTGGCTGCCGAGACGCATTTTTCATCTCTTAGCACGTCTCGATGTTCAATGAAGCGA
ATCACCGCATATAAGATGCGTAAAAGGCAAGTGTCGCCCCGCCCGTAAGAAGATTTTGTT
TAAGTAAGTTTGCTTGGACCCTTAGAGCTTGTTGCATCAACAGAAAGATAGAATTTATTC
TTCAATTATGT

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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