Login
Help

CIS-REGULATION

Submit your Data

  1. Region 'REG00000633'

Cis-regulatory Region

Name

Ci-troponinT -659/-35

Short name

n/a

Region ID

REG00000633

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Brad Davidson (2010-01-18)

Annotator

Jonathan Luchino (2010-01-18)

Curator

Delphine Dauga (2010-04-07)

View position in WashU

Description

This sequence drives the entire Ci-TnT expression.

Be careful, coordinates in the paper are different from ANISEED coordinates. We took the KH transcript model as reference.

Coordinates in the paper : -650bp/-50bp

Hierarchy of Regulatory Regions

Modification of Ci-troponinT -2191/74 by deletion

Regulated gene(s)

KH2012:KH.C4.57 (TNNT1; TNNT2; TNNT3)

Construct(s) made to test this region

CONS00000602: pCi-troponinT -659/-35 pfkh::LacZ

Show in situ data
Overview of functional TF binding sites in this region

5,221,8965,222,519

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [5,221,896 / 5,222,519] on scaffold KhC4

This sequence was extracted from the JGI genome assembly using the primers given in the publication: TropTF657-GCAACCAGATGC, TropTB49- GGTCACTGGACCATGG

Show sequence

Length: 624

GCAACCAGATGCTGGTATTACAATACGAGGCAATAAAGCGGCCTAGATAGATAGTAAGAG
GCGAGAAACGGTCGAATGCATTGCGAGTATCAAGCAGCGATCCCAGCTCCGCTTCGATTG
TCATTAACACCTTGCGATCCAGAATCGTGACGTCACCTACACGATGACGTCAAAGGTGAC
GACAGGTTTTGAAAAAAAGGTTGAGTCTTATTCTATAAAAGGTTGGTCGGCAGCAACATA
ATCATTATCGAAGTCGCTTCAGCTTCATTCCATTCCTACTTCAAAGCATCAGCTTCTCAG
GTCTTAAAGTTGTAGCTTCAATATGTTCATACAGAACCAAGCAACAATTATTCAATATAG
AAAAAGCAGTTCAGAAAGTTTATCTTTGGCATAAATGTGACGTCATAGTGACGTACTCGG
TAATATATTTCACCGGTGCAAATTTGCCAATTAGATTAATTTGGTTAAACCAAGGTATTC
GAGAAATATGTTTCGCACAGTCGAATATCTGCTTGTGATGTCATAAGCCAGCAACGTAGA
CAGACGTATCTTCAGCTGTCGTTCTGTGACGTCATAGTGGTATCGGCGCATTGTGCCGCG
GTCGGCACCCATGGTCCAGTGACC

Reference(s)

Davidson et al. (2003). Evolutionary origins of the vertebrate heart: Specification of the cardiac lineage in Ciona intestinalis. Proc. Natl. Acad. Sci. U.S.A. 100(20):11469-73

Back to Top