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CIS-REGULATION

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  1. Region 'REG00000636' > 
  2. Region 'REG00000632'

Cis-regulatory Region

Name

Ci-PC2 -1718/96

Short name

n/a

Region ID

REG00000632

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2010-01-15)

Annotator

Delphine Dauga (2010-01-15)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.

Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-PC2 -2786/98 by deletion

Regulated gene(s)

KH2012:KH.L128.2 (FURIN; PCSK1; PCSK2)

Construct(s) made to test this region

CONS00000601: pCi-PC2 -1718/95::Kaede

Show in situ data
Overview of functional TF binding sites in this region

230,969232,782

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [230,969 / 232,782] on scaffold KhL128

Sequence from JGI V1.0.

Show sequence

Length: 1,814

CCATTCAAATAAAATGCTGCTTTAAGAATTCTTCGTTTTTTCACCGTGTTTTTAATTAAT
TTAAATTACAATAAAACAGCTTAACCGTTAACGTCCCTGTAAGATAATGAATTTATTTGT
AAACGGAAATGTATAAAACTGCGCACCTAATACCCTTTTAACTTACGACAGTCGACCTAG
GTTCTAACCGATGTTCGTTCTAACCGTCGCTTCACCCTAAGAGTGATACACCAGGTTATA
CAAGCTCTTCTCTGTGAGAATTTATAAATAACCATCGCATATCTTGGGCCGTCTTACGTA
CGCTGTACCTAATCGATAAATAACCGCAGAAAAAAATCCATTTCCTCTCAGTATTTTCCA
ATGACGTCAATATTATGACGTAGAAATTCTATATCTAAGCTTCCGAGTAAACATAATTGA
TCCGTAAAGCTTCGCCCTTTTTACTGCGGTTAACGATAAATACGCCCCTTTTATATCTAA
TAACTGATACAATTCTACAACTGTAATACATTATGTCAGCTGGCGCAGTAACACTATTAC
AATATTTGCAGCCTAAACCTTTTACATTTTTTTATCAGTTAAATAAAACGCCTTTCACGT
GACACTTCTTGCGCTGTTATACCCCTAACATATGCCACGTTCGTAATTATAAAGATATTC
CAGATATACCGTTCTATGTGCGACTGTAATACATTATAGTACCAGCTGTTACAGTATTTA
CTATCCAATACATACACGTGCGACATTGTCTTACAATCCAATTCCTATACCGTACCCTTT
TATCGAACAATTTTCGCTTACCGCTTTCCCAATTATAAACACATTGAGATATACCTTCTA
TAAGATATCCGATAAAACTTTTCTTATTCTTTTCTGCCCTACCGCGTACGTTTCACAATA
TCAGTGTTGCTCCGGTAAGCTTAATTACGTCCCTGCCCGCTTATGTATTATTCATACACA
AAAACTAGCCATGCGTGACGGCCTGTCGTTGCTGGTATTGTGACGTAAAATGACAATCAA
AAAAGGATTAGAATACGTTCGATAGGATAGGGAATTTAAAACACTATTGATTATCTGGCA
CAGATGTATAAGATGTTTGCACCGTGGCCTATCGAATGTGTTTAGAATACATTCATGTGT
GTGATAATACACAAACAGAGATCTATCTTCGCTACATTTATAGTACTTTGTGGCAAGATG
GAATACAGTTAGCACCCAAATCCCATATTTTTTAAATCGTGTATTTAACAATTACCAGCG
CTCTTTAGAGCCACGATTATATGAATTCCATCTTACCTTAACCTACTATATTGGATTTAT
TTAACGCCAGTTATGACCCGACTGTTCTTAATCCATATCGACAGCTCCTTTAACTTCATA
GTAGGCTATAGGTACGCATAAGACAGTGTATGTTTTTTTCTTTATCGCCACATATGGTAA
TAAGTCAAAAATATTTACACAAAAATAACCGCATTCTCAAGATTATGAAACAGCTTTGTT
GATTTTTAAAAGCACGATTATGCAATATTACGTGATCATGGTATCCATCTTTCCTCACAG
TACTATAGTTTTTACCTCTTAGCCAGTAACCCCTAGCCCTAATCCTTCACTTTCCTATTC
TATCGACTTTTAATTACCTTTAGTAGGTTAAAACTATTGTAGGTGTATGTGTCATTGATC
AAGACACAGATAGAACTTTGCTGAAAACCAGTGATACCTTAGGAGTAGTCAGCGTTATAT
CCTTGTACTGCCAGGCGTTTTTTTGCAAAACGAGGAACAAGTCTATTTTAAAGATTTAAT
ATCGTGGTGTTACT

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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