Login
Help

CIS-REGULATION

Submit your Data

  1. Region 'REG00000609'

Cis-regulatory Region

Name

Ci-troponinT -542/74

Short name

n/a

Region ID

REG00000609

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Christopher D. Brown (2009-12-12)

Annotator

Clara Degos (2009-12-12)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model.

Construct #1163 in the paper.

Hierarchy of Regulatory Regions

Modification of Ci-troponinT -2191/74 by deletion

Regulated gene(s)

KH2012:KH.C4.57 (TNNT1; TNNT2; TNNT3)

Construct(s) made to test this region

CONS00000579: pCi-troponinT -542/74::LacZ

Show in situ data
Overview of functional TF binding sites in this region

5,221,7855,222,401

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 T-Box n/a TTAACACCTT [-537 / -528]
2 bZIP n/a CGTCAC [-510 / -505]
3 bZIP n/a CGTCAA [-493 / -488]
4 bZIP n/a CGACAG [-481 / -476]

Sequence

Aniseed Coordinates: [5,221,785 / 5,222,401] on scaffold KhC4

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 616


TGTCATTAACACCTTGCGATCCAGAATCGTGACGTCACCTACACAATGACGTCAAAGGTG
ACGACAGGTTTTGAAAAAAAGGTTGAGTCTTATTCTATAAAAGGTTGGTCGGCAGCAACA
TAATCATTATCGAAGTCGCTTCAGCTTCATTCCATTCCTACTTCAAAGCATCAGCTTCTC
AGGTCTTAAAGTTGTAGCTTCAATATGTTCATACAGAACCAAGCAACAATTATTCAATAT
AGAAAAAGCAGTTCAGAAAGTTTATCTTTGGCATAAATGTGACGTCATAGTGACGTACTC
GGTAATCTATTTCACCGGTGCAATTTGCCAATTAGATTAATTTGGTTAAACCAAGGTATT
CGAGAAATATGTTTCGCACAGTCGAATATCTGCTTGTGATGTCATAAGCCAGCAACGTAG
ACAGACGTATCTTCAGCTGTCGTTCTGTGACGTCATAGTGGTATCGGCGCATTGTGCCGC
GGTCGGCACCCATGGTCCAGTGACCATATAAGTTCATGTTGTTTTCTTTCCATCACCAGG
TTATAACTTGATTAGACTTTCTTACCTGACTTGACCGTTTGCTCAAAAATGTCGGACTCA
GAAGAATACAGCAGCG

Reference(s)

Brown et al. (2007). Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317(5844):1557-60

Back to Top