- Region 'REG00000608'
Cis-regulatory Region
Name
Ci-MBP -262/123 CRE mutated
Short name
n/a
Region ID
REG00000608
Status
Curated
Origin
engineered region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Christopher D. Brown (2009-12-12)
Annotator
Clara Degos (2009-12-12)
Curator
Delphine Dauga (2010-02-26)
Transcription start site is based on the start of the first exon of the KH transcript model.
This region corresponds to construct 1415 in the paper. In this construction the MyoD site was absent and the CRE site was mutated.
Modification of Ci-MBP -262/123 by substitution
- Ci-MBP -1360/123 REG00000513 [ regulatory_region (extended_promoter) ]
- Ci-MBP -270/123 REG00000602 [ regulatory_region (extended_promoter) ]
- Ci-MBP -1360/123 MyoD/Tbx6/CRE mutated REG00000606 [ regulatory_region (extended_promoter) ]
2,084,0892,084,473
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | T-Box | n/a | ATAGCACCTA | [2,084,459 / 2,084,468] |
Aniseed Coordinates: [2,084,089 / 2,084,473] on scaffold KhC1
Transcription start site is based on the start of the first exon of the KH transcript model. In this construction the MyoD site was absent. The CRE site mutated was remplaced by "-".
Show sequence
Length: 385
GTCGCATAGCACCTAGATTCGA--------CGTTAATTGCAACACTCGCAGCACTCAGCC
TTTTTCTCTTGCGTAGCAATCAGCACAGGGCGCCTTGCTCTTATCAGTAAGAAGCCGCAT
TCTTTTCTGCCAGTCAAGTTTTGCACAGACGAAGCACAGACCAAGTGACTCAAGGGTGTG
CAAGCATCTGTTAAGTTGTTTATATTATGTTGAATGTACTTGATGTGCATTTAAAACGAC
TGTAGAAGCAGTAAGCAGCAGGTTTTGTTATTTTTTTTTACAGATTCCCCTAGAATCATA
AACCATTAAGTTTTGAGTCGTACAACTGATCTGTGTTTCTAAACATCAGCGGAATTTGTT
TCAAATATCAAGATGCCAGTGCCAG
