- Region 'REG00000607'
Cis-regulatory Region
Name
Ci-MBP -268/123 Tbx6/CRE mutated
Short name
n/a
Region ID
REG00000607
Status
Curated
Origin
engineered region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Christopher D. Brown (2009-12-12)
Annotator
Clara Degos (2010-07-22)
Curator
Delphine Dauga (2010-02-26)
Transcription start site is based on the start of the first exon of the KH transcript model.
This region corresponds to construct 1267 in the paper. In this construction the Tbx6 (ATAGCACCTA) and CRE (TGACGTTT) motifs were mutated.
Modification of Ci-MBP -270/123 by deletion
- Ci-MBP -1360/123 REG00000513 [ regulatory_region (extended_promoter) ]
- Ci-MBP -270/123 REG00000602 [ regulatory_region (extended_promoter) ]
- Ci-MBP -1360/123 MyoD/Tbx6/CRE mutated REG00000606 [ regulatory_region (extended_promoter) ]
2,084,0892,084,442
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | bHLH | n/a | CAGCTG | [-266 / -261] |
Aniseed Coordinates: [2,084,089 / 2,084,442] on scaffold KhC1
Transcription start site is based on the start of the first exon of the KH transcript model. In this construction the Tbx6 (ATAGCACCTA) and CRE (TGACGTTT) motifs were deleted and remplaced by "-".
Show sequence
Length: 391
CAGCTGGTCGCAT----------TTCGATG--------TTAATTGCAACACTCGCAGCAC
TCAGCCTTTTTCTCTTGCGTAGCAATCAGCACAGGGCGCCTTGCTCTTATCAGTAAGAAG
CCGCATTCTTTTCTGCCAGTCAAGTTTTGCACAGACGAAGCACAGACCAAGTGACTCAAG
GGTGTGCAAGCATCTGTTAAGTTGTTTATATTATGTTGAATGTACTTGATGTGCATTTAA
AACGACTGTAGAAGCAGTAAGCAGCAGGTTTTGTTATTTTTTTTTACAGATTCCCCTAGA
ATCATAAACCATTAAGTTTTGAGTCGTACAACTGATCTGTGTTTCTAAACATCAGCGGAA
TTTGTTTCAAATATCAAGATGCCAGTGCCAG
