- Region 'REG00000606'
Cis-regulatory Region
Name
Ci-MBP -1360/123 MyoD/Tbx6/CRE mutated
Short name
n/a
Region ID
REG00000606
Status
Curated
Origin
engineered region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Christopher D. Brown (2009-12-12)
Annotator
Clara Degos (2010-07-22)
Curator
Delphine Dauga (2010-02-26)
Transcription start site is based on the start of the first exon of the KH transcript model.
This region corresponds to construct 1595 in the paper. In this construction the MyoD, Tbx6 and CRE motifs were deleted.
Modification of Ci-MBP -1360/123 by substitution
- Ci-MBP -1360/123 REG00000513 [ regulatory_region (extended_promoter) ]
- Ci-MBP -270/123 REG00000602 [ regulatory_region (extended_promoter) ]
- Ci-MBP -1360/123 MyoD/Tbx6/CRE mutated REG00000606 [ regulatory_region (extended_promoter) ]
2,084,0892,085,571
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,084,089 / 2,085,571] on scaffold KhC1
Transcription start site is based on the start of the first exon of the KH transcript model.
In this construction the MyoD (CAGCTG), Tbx6 (ATAGCACCTA), and CRE (TGACGTTT) motifs were deleted and remplaced by "-".
Show sequence
Length: 1,483
AGCAAAGTTTCGTTCCAATTTAGCGAGCCACCCGGGATAGCTGAAGAAGACGAGAATGAC
AATTTAACTTCCAATTCACAAGCTGTAAACTCTCTTCCAACTGTAAAAGTAATCGATCCA
AAAATTAACGTTGCCGATGACGCTGGTTACATAAACACTCCGTTATAAAGGAAATCTATA
TATCGCGTATATATGCCCGCCGACATTTTTCTCGTGTACATTTATACCGCTTAAAGCCAG
ATTGTTAGTTATTATGCGTAGTTTACCGAAAATCACCATACGTATATAGCTTGCTTCTGC
CAAATCAAATATACAGTAATGTGGGGGAGATAGGACACTTGTAATTATTCTATTTTCCTT
GTCCCAATTGGTAGTAAACAAAGAACAAAACAAAGAATTTAAAACCGCATACTCTCGATT
TCGAAATGGACCGTTGTTAATTGTTTAAAACACGATTTTTTTGGATATTATTAAGGTGTT
CCATCTCTCCCCACAACACTGTATATATACTTTATATTTTTTTGGTTGTTAGTCTAGTCA
ACCTATTACCATGCAAGAGTGATTCTGCGAATACAACAACAAAATGTAACTATTTTTGAA
GTGTTTTGTTGATGTATTTAATGTCTATAAATTAAAACTAACAGTTGGCTATTAAACATT
CATTTCTATATATAACACGTCATCGGGTTGCTACGTCATCAGAAAACTGTTGACAGCTAA
AGTACTGAAGGGATAAATATAGACGCGTGCAGACTTTGCTGTAAAACTTAAATGTTTTTT
CCAGGTTTCTAGTATACAGTTATGGTTTAACGAGTTGCAGATTTAAAGATTGAGAAATGT
AATGTACAGTTTCATATAAAAAATAAAAAAAAGTTGTGTGTGTGTATAAACAAAAAAATC
TGTTAAAATACATTTCAACCCGGTAGAGATATACATCAGTATGCAAATATTTAACCTAAG
GAATACGTTACATCGTGTTTAATAAATCGACTTGAGGTCAATAATTTAAAAATATCAAAC
TTTGCTACCGAATGTTCAGCCATGCAAATGTATACCACCAACGGTCACTGATTCAATTCC
CACACATCAGTA--------------------------------------TTAATTGCAA
CACTCGCAGCACTCAGCCTTTTTCTCTTGCGTAGCAATCAGCACAGGGCGCCTTGCTCTT
ATCAGTAAGAAGCCGCATTCTTTTCTGCCAGTCAAGTTTTGCACAGACGAAGCACAGACC
AAGTGACTCAAGGGTGTGCAAGCATCTGTTAAGTTGTTTATATTATGTTGAATGTACTTG
ATGTGCATTTAAAACGACTGTAGAAGCAGTAAGCAGCAGGTTTTGTTATTTTTTTTTACA
GATTCCCCTAGAATCATAAACCATTAAGTTTTGAGTCGTACAACTGATCTGTGTTTCTAA
ACATCAGCGGAATTTGTTTCAAATATCAAGATGCCAGTGCCAG
