- Region 'REG00000605'
Cis-regulatory Region
Name
Ci-MBP -214/123
Short name
n/a
Region ID
REG00000605
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Christopher D. Brown (2009-12-12)
Annotator
Clara Degos (2009-12-12)
Curator
Delphine Dauga (2010-02-26)
Transcription start site is based on the start of the first exon of the KH transcript model.
This region corresponds to construct 915 in the paper. In this construction the MyoD, Tbx6 and CRE sites were absent.
Modification of Ci-MBP -247/123 by deletion
- Ci-MBP -1360/123 REG00000513 [ regulatory_region (extended_promoter) ]
- Ci-MBP -270/123 REG00000602 [ regulatory_region (extended_promoter) ]
- Ci-MBP -1360/123 MyoD/Tbx6/CRE mutated REG00000606 [ regulatory_region (extended_promoter) ]
2,084,0892,084,425
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,084,089 / 2,084,425] on scaffold KhC1
Transcription start site is based on the start of the first exon of the KH transcript model.
Show sequence
Length: 337
CAGCACTCAGCCTTTTTCTCTTGCGTAGCAATCAGCACAGGGCGCCTTGCTCTTATCAGT
AAGAAGCCGCATTCTTTTCTGCCAGTCAAGTTTTGCACAGACGAAGCACAGACCAAGTGA
CTCAAGGGTGTGCAAGCATCTGTTAAGTTGTTTATATTATGTTGAATGTACTTGATGTGC
ATTTAAAACGACTGTAGAAGCAGTAAGCAGCAGGTTTTGTTATTTTTTTTTACAGATTCC
CCTAGAATCATAAACCATTAAGTTTTGAGTCGTACAACTGATCTGTGTTTCTAAACATCA
GCGGAATTTGTTTCAAATATCAAGATGCCAGTGCCAG
