- Gene 'KH2012:KH.C4.529' >
- Region 'REG00000601'
Cis-regulatory Region
Name
Ci-GAD -474/412
Short name
n/a
Region ID
REG00000601
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Kusakabe team (2009-12-12)
Annotator
Delphine Dauga (2010-01-11)
Curator
Delphine Dauga (2011-08-17)
Conversion to aniseed format of DBTGR database entry from Kusakabe team.
Coordinates are based on the first exon of the KH transcript (KH.S761.6.v1.A.ND1-1).
7,5498,434
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [7,549 / 8,434] on scaffold KhS761
Sequence from JGI V1.0
Show sequence
Length: 886
TGTTCGCATAATTGTGAGTATTTATGTTTAATCTTTAAACGCACATTTCAATATCTTTGT
TTTAGTTTGTTCATCATGCATTGAACGCAACGATCGACAATCGTGTGTGATTTGTAAGAA
GGTAAATATATAAAACAAATGAAATAACAATAAAAATAAGATTTGTTGCAGAAATATTCT
TCATCTCAAATTGTACCAAACATAATTATTCAACAATTTATCAAATGTTTACAAAATAAA
AGGTAAAACTTCAAATAATCATCCTATCTTAAAATAAATCTTTGCATTTTAAACTTATGC
TGTTCCAGACCAACGCACCAAATCAACCCCAGCCAAGTTAATTTAGAGAAAAAATACAAA
GAAATAATTTCTGAAGCACAAACTTCAGTTCATAGTATTGACTTGTTTATGGGGCATTGT
GATGTCATACAACCTGTTGTGACATGTAAATATAGTCCGGGGAGAAAAAGTATGTAACAA
TTAAGTTAACAATGAGCATTGTTTGATATTAATTCACGACAGAAGTTTTATGTCCCTCGT
GTGAAAGTTTTGTCGCAAAGAATCAAATTAATTTTCACCTCGATTCGTGTCTTGCAAGAG
AAGAAAAAAGAGAATGTTTAAGGAAAAAACAAAGAAAGTAAATTAGGAATACTTGGTTAA
AAGTTTTGTTTAATGTTTTTTATATTTAGTAAAATTTCCACCAAGCATAATTCATCACGT
GACCTGGTTTCGACCAATGAGATTGCTGACGAACACTCAATGCCAAAGGAAAAAGGTTAA
ACTTTATAAATTATCATTAAATTGAAATTAAACTCTCAATTACAGCAGATAAAACAAACT
TGGACCTAATGCTTAAAGACGACAGCCAAGCAGATGAAATAAAACA
