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CIS-REGULATION

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  1. Region 'REG00000600'

Cis-regulatory Region

Name

Ci-POU-IV -3782/3

Short name

n/a

Region ID

REG00000600

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2009-12-12)

Annotator

Delphine Dauga (2010-01-11)

Curator

Delphine Dauga (2010-02-26)


Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.


Transcription start site is based on the start of the first exon of the JGI transcript model.

Construct(s) made to test this region

CONS00000570: pCi-POU-IV -3782/3::Kaede

Overview of functional TF binding sites in this region

2,304,3962,308,181

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [2,304,396 / 2,308,181] on scaffold KhC2

Sequence from JGI V1.0

Show sequence

Length: 3,786

ACATATCGTATCAAAAAATATACAATAAGTCTGTATACAGCTTTTGCCTATAGATAATAA
TATGAACGTGAGTCTATATTGCATTGAAACTGTCGTGGCAAAAATTCGATTGATTCCTGT
TGTAGCCTTACTTGTTCTGTTCTATTATTTTCACTTGTATAACTTTCACAATTTAACGAC
TTTCTTTATAAAAATGAATAATTAATCCACACCACTTGCATGGGGTGCGAAGGCAAACTT
GCCACAAATTGCATTAATTTCTAATGAATTAACTCGAGTGCGACGAAAAGTTTGCTAAAA
TATTAATATTTTATAAAATCTCAACTCTCCTAGGACCAAATCGTTTAATGAATAATTCAA
CCCGAACTCTAGCGAGCACAACACTGAAATGAAACCTATGGTTCTACCACGACCGCCCAT
CGTGCGCCTTCCTTTCTCTCTGCCTTGCTACGTAATAATCGTTGCATTGTGTCATCTGGT
TCTCCGGACGGGCGGGTTGGGTGTCACGTGCCCAGGTGTCTCTGACGTCACCACTATCCA
TCCGTCGAGCGGATTTTTCAAGAAAATACCGGAACTTTCGAAACCGGGTATCAAGGTGGA
ATGAGCATCAAATATTCAATACCTTGAAAAACTTGCTTAATAATCAATCACTGCGAGCAC
CGTGGCTTCCTATAAACTGCGCAGCCACTGAATACGTGTTCCTTTACCCCCAAATCGATT
GAGACTTTTCTTGCAAACATGAACTTGAGTATTTAAGGTTCCCAAACAGAGGCGGTATGA
TTCATTTTGTCGGAGCTGACGGGGTTAGGGTATATTTACACGCGACAGATGCGTCGTGCG
GCGAATTTATGAATATTTCGCGGCTAATTATCGCCGAACCTCTGCCTTTAATGGAAGATA
GAGAGTGATCAAAAATCGATGACAGAAACCAAGTAACAGATGCGTTTTGTAATCTCGAAT
TGTGTGGCCAGTCCCGGAGAAAAGTTACACAAAGCGGTCATCAGATTATGACTGGTTGAA
ATCGGATTTTGTCCGGCGTTTGATAAAGGAGGAAAAAGTGTTCCCTCTATCCAAGGAATC
GTTGATATCTTCATTAAATATAGAGGAGTGTGGGAATTCATGAATTTCTGATGCCGTTTC
ATTCATTAAATATTTAATTTTACGCACATTGTATCGGCGCAATGTTGTCAAGTCGGACAC
ACGTATAATTGCCAACAACGAAAATTTTCCTATAGGTATATTTATGTTTACGCAAAAATA
GAAATTTTCGCAAAAATTTCAAGTGTAATATTTAAAAAAGTTCAAGGAAATATTTATTAC
ACTGCACAACTTAGTCGCCATTTTGTTCCATAAAATATAAGCAATTGTATCTTTTTATAA
GTTCTACTGCAATGTCAGTCAAAAAATCGAAGTGGTAAAATTTTGGAATTGGACACCATT
GCCAATATCGTCGCCAACTTATAGTTTTTGTTTGATTTTTTTCACAGTGACGAGGCTTGC
GTGAGTACGATGTCCGTAGCTCAGCGTGACGAGAGAAACACAACATTCTTTTCTTTTGTG
AGGACACAAAGGACACGCGACCTTCCTAATTTCGATCTCGATTAATTATTCATTAAGTCA
CGTGGCGGGCAAAAGTGTAAAGCTACAGCAGTCGCGGAGAAGACCCCCGTTTTGTGGAAC
GAACCCAAAACGATATTACAGCGCGACAAACGTGAACAACACACTCGGATGCTGTTTTTA
GGTTTCGCTGACGTTGTGACAGCGACGTCAAGCGAAGTGTTGGCATGGGTCAACTGACAA
AAGTTCCCCCGCCATGCTAGAAATCCCATTTATCACATCGACAGCAAACGTAATATTCAG
TTTGCTTGTTTATTGTTAGTGTTTTGTTAAAGGTTTCCTATAACGAAAATGATAGATTTA
ATTTTTTTGCATAAAAAAAACGGTAGATTTGTTGTTTTTGATATTATATCGACCTTGGCA
GAAGATATAACTGATATCACTGTAAAAATAAAACATAGAAAACGGCACGACGACCTGTAA
ACAATAATATAGTACTGTGAGGGAAGACGGGACACCTTAAGCACATAATTTCCAAACATT
CTGATCACGTTTTAAGCAATTAACAACGGTCTATGGGAGTTGTGAGGATAAGATTAATTC
TTTGATTGTTCTAAGTTTACTTCTAAATATGACAAGAAAATAGAATGAAAATGTGTCCCT
TTCTCCCCTACCCACTATAAATTTATTTTCGCCATTCACTTGTAGTATGCTTTTTTGAAA
TTTTCTTCTTGGTTTCACCTCTATTTTTCTATCTCTGACTCGTGAGCGCCAAAGCGCGGC
AATGGAAAATATTCTAACACGCCCCTTGGGTATATTGACAAACGCCAGTTATATATTAAT
GTAAATGTAACCTTACCAATTATCATGCATTACATATGGCACGGCCAAGTGACTGATCTA
TGCTTATAAACATTAAGCGAATTCAGTCTCAAATTAAAAAAACTGCTGATTAAAACTAAA
GTAAATGTGTTCTCGGTTCGGTTAATAAAACTATAGGAACGCTGATATAGCCATTTTTAT
ACAAAACATAACCATTTGAATCACATAGTGACGAATTCCTATACAATTCACCCTAAAAAA
AATTTGAAAAAAAACCATGAGGCTTCACTAAAAGGCAAATTGAAATCGATCATCTGTTGC
AACATTCATCGATTGAAAATTACAAAAAACAGCCTTGAAACTTTTGTGAAAGCTTTGTCA
AAGTTCAGAATTTACCAAATTGAGTTTTAAATAAAAATCTTCGTTCACTTTGTAAATGGA
GCAAGCAGGAAGGTTAGGAGAATGTATCAGATTTAAGTTGCTTTATAATTTGGCTGCAGT
ATTTTTAGTTTTGCAGAGCAACTGGACTTACAGAGACTTGTAGGGTTTCTCTATAATTTT
ATTTGTTTCAATTCTCAAAGATAAGTCTCTAGTTAAATTACCACCGCCGTGTTTGGTTTA
AGATAAGGATTCACACACTTAACTTCGGCAATACCTTTACAATGTACATATTACGCTGCG
TCGAACATGCATATTACTGATTAGGTAAACTTAATATACAAATTCAGGCACCACCAGCGC
TTAAATTATACTGAAGTACCGGACTGTACTAGATTTCCCAGTATTGTGATATGGCTTATT
CTTTATATAGTAGGGGGGGGGGAAGATGGAACTTAGCGCATAATATCCAGATATCCTTAT
CGTGTTTTAAACAATTAACAACGGTCTATGAGAGTCATGAGGACATAGTTTCACATTTCT
TTGAATGTTCTTTGTTTACTACTAAATGGGACAAGAAAACGGAGTTAAAAGTGTTCCATC
TTCCCCCATCCTACTGCGTATATATAGTAATGTGGGGGAAGACGGGACACCTTTAGCACA
CAACATCCAAGTATCCTGATTGTGTTTTAAACAATTAACAACGGTCTATGTGAGTCGTGA
GGGTATATAGTTTTATAATTATTTGAATGTTCTTTGTTTATTACCAAATAGAACAAGGAA
ATGTGATTAAAAAGAGTCCCATTTCCCCCACCCTACTGTACCATATTTAGTGGACAATGT
ATTTAAAGAACAGAAATTTTTGTAAAAAACTGAAACAGAAAACTTAACGTTTTGTTTCGC
ATTTAGCTTATGGCAACTTGAATAGAACTTGTTCACGTGCACAAAAACGATACATTTTAC
GTTCATACCTAACTATTGTATTTGACTTAACGACATGTTGCTCTGTTTAGAACTTGTTAC
AGTCGG