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CIS-REGULATION

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  1. Region 'REG00000598'

Cis-regulatory Region

Name

Ci-glyt-II -1546/45

Short name

n/a

Region ID

REG00000598

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2009-12-12)

Annotator

Delphine Dauga (2010-01-11)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.


Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C1.870 (SLC6A14; SLC6A5; SLC6A7)

Construct(s) made to test this region

CONS00000568: pCi-glyt-II -1546/45::Kaede

Show in situ data
Overview of functional TF binding sites in this region

4,051,0044,052,595

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,051,004 / 4,052,595] on scaffold KhC1

Sequence from JGI V1.0

Show sequence

Length: 1,592

AAAAGAATTTGCCCGCTTGTCGAATTATGCTAACTAGAATGCTAAATTTTAACTAGAATG
CTAAATGTTTATTTCAGTAATGTATAAACAAAATGATCGTAAATGACTTCTTAATAGTGA
TACGATTTTTAGCATCTTGCCCTACATAAGTTGTCTATACTGTTACCAAACGATATGTTA
TTGTTTTAATATTTATACACGCTGATGAACGACACTGATTTAATAATTACCGACATATTT
TAAAAGTTCGGTGTATAACACGTATAGGAGGTATATACTATATGTTTTAATGAATATGCA
TTTATGTGTTATAAACTAACTAAGTAGTAAACTAGTTTTGTGTTTGTTTTACCTAATAAA
TTTATACCCAATACTGCAAATAAAATATGTAGCTAACACAAGATGTCATTCTCTTTTGAA
TAAGAGACTGACGATGTCATTTATGCGAAATATATATCCTCAGTTATACTAATGATTGGA
CTTTTTCCCTGAAATATATTTTCTCTTTTATGCTATTGATGACATTTTGTCTGTTCTACG
TTTTCCTTGCACTAAATCTTTATTGTATTTTCAATCAAGAGGGGAAATCAGAGAAATACT
TTTTAAAATTATATGTAGCAGGGTGGGGAAAGATGGGACACCCTTTTATTCTATTTTTCG
CCTCATTTGCTATACAAAACAAAGAACATTCCAAGAATATATTTAGATATTGTAGTGTGC
TAAAGGTGTCAAGTCTTCCCCTACACTATACTGTATATAAAGTTTACGAGGCAAAGAAAC
TAGTACAGTCTGGTGATTTCGATAGCTTTACTATAATTTATTAACCAAAATTAACAAGGA
TTTTTAAAATATCCCATCTTAACCCGCTTGTTTTCAAAGCGCTAAAATTACACCTGGTGT
GCGAATCGCTAAATAACTCTACGTGTATACTTCTTTGAAGTGTTGTCAATTAAAAACATT
ATGATAGTAAAAATGTGTGTATAGTATCACACAAAATCCATGTATTTTGAATCATGTGGT
GTGGACTTTGAAATACTGGTCATTATATTTTAAAGGGTTTCATCTTATCCTATACCCTAC
TGTAGATTTCGTATCGTTTGAATTTATAAAGAAAACGTAAATAAGTAATTTACAAACGTT
AGTTTGTTAAAGGTTTACCAAGGAGCGCTTGTTTCTGTTTTCCAACAATAGGATTGAAAC
GATTTTTATGACAGAACTATAAAAGCTCTTGTGAACACTTGAATGCTGGAGGAGAAACTT
CGGGTAGAAGGTTTTCTGCTATTCACAATTTAATGATTCGTTTTAGCGACTTATAGCCCG
CGGGAAGGCCACTTGACGCACCGACGGCTCAAAAAGAAAAAAATATTTCTTTTGTAAAGA
TAAATGTAAAATGGCTTTGAGCGAATCGCGATAAATTAGAATTTCATTTATGGGCGTTGG
TCTGCAGAGTGTATTTTAGGTGTAGTGGCGTTTATCAAGTTAACTTTACCCATAGGGACA
AGCAAACTGTATTGATTTGTTTGTATTTATTTACAGTATAAATAATATAGGATTAAAAAG
ATCTACAAAGTGGACGTGAACTGTAGACATGG

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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