- Region 'REG00000589'
Cis-regulatory Region
Name
Ci-MA5 -671/30
Short name
n/a
Region ID
REG00000589
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Kusakabe team (2009-12-12)
Annotator
Delphine Dauga (2010-01-27)
Curator
Delphine Dauga (2010-02-26)
Conversion to aniseed format of DBTGR database entry from Kusakabe team.
Transcription start site is based on the start of the first exon of the JGI transcript model.
4,7545,455
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,754 / 5,455] on scaffold KhS1440
Sequence from JGI V1.0
Show sequence
Length: 702
ATTGTGGATGTGATTTGGTACAGCCTATTGTTCGTTACCGAGTGATGATTTGTATGGTTC
TTATGCGCAGAGATATATCTCTGTGGGTCGTTATAACACAGGTGTTCTGTTTCCTAAACC
TCGTGCCTGCTTACAAGTTACCACGCATGTAACTTTGTGGGTAAGAGCACACTGTATGCA
ACGGGAACCTATTTTTGTAACAAACGCGTATACCAACAAAGAGTGAACTTCGCTTTTACA
CCATTTTTGATTTCATTGGTATGCCTATTTAAGGTGTAAAATACGAACACATGGTACCTT
GGGGTAAGATGGGATACCGTTAGCATAAAATTCCAATATTTTCCTATCGTGTTTTGAACA
ATTAATAACGCTATTATAAAAGTCGTGCGAGTATGATTATATTGTTCCGTAAATGTGCTT
TGATTACTACGGAATTGGACATTAATGAGAATAAAACATGTCCCATCTTACCACACCCTA
CTTTACTTTACTAAGCGTTGATACGATCGCCACTTACAACATATGTCGTTTGATCTTTCC
ATATAAGGCGCGAAAGATAACTGCTGTCGGTCGAACCAAATAAGGCGTGATGACGTAAAG
GTGGTGACAACTGGAGTTTGAGTTGTAGTATATAAGTGACAGCCATGGACCACAATACAA
CAAACTCACTTCAAGCATCCATCTCCACTTCTCAAGCAACCA
