- Region 'REG00000586'
Cis-regulatory Region
Name
Ci-VGLUT -4620/-12
Short name
n/a
Region ID
REG00000586
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Kusakabe team (2009-12-12)
Annotator
Delphine Dauga (2010-01-27)
Curator
Delphine Dauga (2010-02-26)
Conversion to aniseed format of DBTGR database entry from Kusakabe team.
Transcription start site is based on the start of the first exon of the JGI transcript model.
4,779,1964,783,804
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,779,196 / 4,783,804] on scaffold KhC3
This VGLUT cis-regulatory module is active in neurons located at the sites where the endogenous gene expression was observed by in situ hy-bridization. Sequence from JGI V1.0 Genomic DNA fragments containing a 4.7-kb upstream region of Ci-VGLUT were amplified by PCR using a pair of gene-specific oligonucleotide primers 5-gatcgtcgacCCGGTATGTCCACAGCATTC-3 and 5-gtcAggAtccCACTTGTTGTTACTGCATAA-3 (the lowercase letters in the primer sequences indicate mismatched nucleotides introduced to generate restriction sites).
Show sequence
Length: 4,609
TCCACTTGTTGTTACTGCATAAAAAATAACATAGGCCATCTATTATAAACCATGCTAAGA
AAATGCAGGGTAAATACTGCATAAAAAAGTTGTGGGGTGAAAGCTGAACCCGGCACAGAT
CCCAGGTCTCTGACAAGAACTTCACCCACAAAATAGATGATTAAGTTTTGTGGCAAGATT
AACATCAACGGAAAATGGATTTTTTTGTTTCGCTGCGCTACTTTTTGATACACATTGGTG
CATTAGCGGTGACACATGGAGCCACAAAAGCCATGTCAAGGTAGATTACGTTTGTGGGAC
GTCCTCTTCGAAATGGTCTTCTCCATGCTCTTGGGAGTTGCGTGAAATTTCGTTTAAAGT
TGAGTTTCTGTCCAAAGTTTGTTCCTGGTATGGTGGGTTGCCGATTCCGGTGAACCTGTT
ATTAAAATATGATATTTTGATGAAGATATTGGTGATATAATCTTAATCAGTGAAAATAAG
ATTATGTTTGAAAGAGTTTTACAAACATAATATAACACGGGATAATTATAACAGGATAGT
TGTTCAAAAACAGGGGTCTTATTAAAATTGCATGAACATTTATGTAACGGTGAGAAAAAC
AGGATAAGAAAAAAAGATAAAAACCAGTTTTAGCTAGTTTGACCTGGATTTCTAAACATA
TACACATTCTAAAATTTCGTATCTGGCATTAGATCTATCTGTAGGCTATATATATGTAGC
ACATTAATAGGATTTTTTAAAAATTCATAACAATACAATAGTTTCGTTATCGTTTAAAAC
TTCCTTATTACTAAAAAGATACAACAGTTTTATGAAAGTTCCATTTAAGTCTAAACGATA
AAACAACGACCGAGCAATTTTGAAGAACAGTTCATTTTAAGGTGACTTCATCAAAAAGTC
AATGACTATTTTTGAAACTATATAATCGTTTATCCTCAAAAAGGGCGTTGTTATTTTGTG
TTGTTAACTGTTAGGAAATATAGGTGATTATGTGTTAACGGTATTAGCGTTTTCCCAAAG
TAACTATAGTAGGGTGGGAGAAGATGGGACACCTTTTCGTTCTATTTTTTCGTCCCATTT
GGTAATAAACAAAGAACAGTCAAAGAATCATAAAACCGTATCTTCGCGACTTCCAAGATA
TTATGTGCTAAAGGTGTCCCATCTTCCCCCCACTCTACTATATATGAATTGGAAAAAGTT
TCAAGATTGGGTAATTGGGAAAATTAAAATAAAAATGCATATTATAACTACGTAAGTTAT
TTCGTGATGAGAAAGGACCAACATAATCGTGGGCGCGGGAAATTTCGCGACACAATAGAA
CTAGTCACTCTCTAACAATGTTATCCTGCTTCGGGGCCATGAATAATTTAGGTTTGTCTA
CTTGTCATATCGTTACGGGAGCTAGTTTATTTCACTTTTTGCCGTGTAAGTGGTCTTGGG
AGCATTACTATACACAAGGGTGCGACTAACGAACGGATATTCGAAACGAAATTCTTTAAT
TAGTGAAATTTAAATAGGTAATAGTGTGCGACACTATATTAAAATATATATAGGGGTTCG
GTACCAGATCGATATTTTCGATGTTCAACTATAATAAAAATCTAAACGACAAAAACATTT
CTATTTTTTTTGGCAAAAAGCTATATAAATTTTTAGGTATGCTCTCACCTGTATAAAACA
CTTCGAAACCCGTTTTGAATTGTTCTGAGAAGGTCATGTGATGCCGTCGCGAATCCTCCA
TCCGCCTTATTGTTTGACATAATATCCTAAATACCCTCCTGCTCTGGAACAATAAATAAA
TTGTAAATATACTTTATCAATTCCTAATGCAAAATATCAAACTCAATTTTCCCATAGTAA
TTCCCAAAGCAAAAATCAAATAACTAATTCAACAGAAGCAAAAATCAAATAACTAATCTT
CAACAGAGATGCGTCTTTGTTGTATTGCAGGCAAGTTATAAAAAATTCATTCTTTCCTAT
TTTACTCGAGCTGTTCAACCGAGTGACTGTCCTGTGCCGAAGGCAGGTGAAACTGACACA
GACTTAGCGACGCAGTGCTGGACAGCTGACGTTGTAAAACGCTGCACTGTTCCGTTTTTC
TGTCTGTCGGTATTTAACTCGGAATGTCCATTATTGAAAACCAATTACCGCCGCGCCGCT
TACAATTGCTTAAAAAAATAATTGAACTACAATATAAACCAATTCATCTAAGTATATTGT
ATATGAATTGAGTCAAATATAAAGCAATCTCGTAATAACTCTCTCTTCGTTGCTAAATCG
ACGAAAATGACGTTTAATTATCTTATTCAGTATACTCAAGTGGGCGCAATAATTCCATTG
AAGGCAAATTAACCTCCTTGAATTGCAATGTTTTGGTCTCGAGAGACCTCGCTTGGGGAT
GTGGGGTACAAACACCATTATCGACCTGTATGTTATTGACGACTAATCCTTCTTGTGCTG
CTGTTGTGGTAATCACAGTTAATTGCTTTTGCGCATTACAACATATTTCTGTTATGAGTA
GAGCGCCGTGTGTAGCACTCAAAACGATTTGCAATCACTAAAAACAGTTCGCTGTACATG
CGACTTAGTAACGGCTAAACAGGAAAAACTGTTCCCGAAAAAAGACTAAAATCGAAGTAA
AGTGGTTTGCAATAACTAATGAACTTTCCCTACAGCTTCATTATTAGCCACCACAAGATT
AATGATTTGTATAAGTTTGTTCAATAAGTCGTATCTGTAACTTTTGTGATTATAAAATCT
GGGTTTGCTTTGAAAGAACCAACGTATATAGTATGGTGGGGGAAGATGGGGCACTTTTTT
ATTCTATTTCTCGTCCTATTTAGTAGTAAACAATGATTTATAAAACCGTACCCTAACGGC
TTCCATACACCGTTAATAATTGTTTAAATTACAATTAGAATATGTGGACATTATGTGATA
AAGATATCCCATCTTACCCCACAGTACTGTACGCGATGCAGTATAAAGGGCGCCTAATTG
AAGCTAATTAGAAATTTCTATGGTAATGTAATTGGCTTAATTTAGCAATAAAAATAACAA
ATTAGTCACAAAAATAACAAATTTGTGCTAACACATTTTTATGAATAAACTTAAAATTTT
AGTTAAAGTTTAATTGTTGTCAAACATGCATACACAGTTTGTTTTGTATTAATATTAACA
ACGTGTGAAGCAAAGAGGACGGTCTGTGTTTTTCAGAAAGATTTTAAGTGTTGAATGGCA
CTTAACGAATCGATGAAGTTCGGTGATGGCCGATTTTGACTAACGTGTCACTCGCTAAAC
GCACGATCGCTTGCTGGACACATATTGCAGCTGAAGTTTAAAACAAAGCAAGTAGCAAAT
AACTGCTACCCGACACTTAGGATGAACTGAGCTGGTTAAGATGGCGAAAAAGAAATCAAA
GAAGGGAAAACAGGCGACCAACGGTGACCCGAAACCTGCAGGTCAAATTCAGGAGACTGT
TGATAGGGAAAAGAAAAGGCAAGTTACCTACATTTGTTGGCTACCATATCATATACGATG
TAGGTTACATGTTAATTGAGTAAAGGGTAAACCTTACTAAAAATATATTTTGGGGGACTT
TGTCCCTAAACACCCCGATCAAGTAAGTCGGGGTAAGATGGTCCATGTTTCATTCTTTAT
TATTTTCACATTTGGTAGTGTTTAGAGAATTATAAACCCGTATATTTACGACTCTTAAAA
CCACGTTTAAAATTTTCCTTATGTAACAACGGTATCCATCTTACTCCACAGTAACAGACC
ATCAACACCGACGTTTTCAAAATACCGTGGAATACTGGTCGCAAGTTTGGTTTGTATGAT
AGCTGTCGCGATCGCTGTTTTTACTTCAACAACAACGATAACGAGCACGTAAGTATTTGT
GTATGGGCTTAATTTATCCATAGATTTTTAAACAATCCGCATTTCGCTGTTTCCTTATTT
GGAAACGAATCTTTTATATTTGCCGAATTTTAGGTGAGGAACGTTGAGATTTTAAGATAT
TTATTTACAGACCACAAATTAAAGTCGTTTATGAAGAACCAATTTACCTTGATCCAAAAT
CAGAAAGCAGTGAACGGGAATTTGAAAATTTTTCTGATGTCGGCGTGAAAGAGGAAGACA
GAAGACAAAAGGAAAAAGATGACAACGGAGGAGTAATAGATGCTCCTGCGGAAGACGATC
AAGATGTGCACGGAGTACCAAGAATCGAGGAAGAGGAGACTCAGGAAAATTTAAGCGATG
ACGAAACAGACGATACCTCGCACCCAAACGGAGATGAAATTACTGATAGTGGTGATTTTG
TCGTGGAGGAGAAAGATCGCAGGTCGGATGTTGGAATCAAGGTTAGTTCCGATAAATTGG
AAGATGCGATGGAAGGTTTAGATTCTTTGGAAACGAAAGTGGAGGTCAAGAAGAAAGAGG
AAGAAAAAGAAGAAGAAGAATGGATTGAGAAGGAAACTCCTGAGAAAGTAAAACAAGTTT
TGGAGTTTCCACTCAATAAGAATAAAAAAGAGATTTTGGGCTCCGTGCAAGAGCACGAAA
AAAGAAATTACGAAAAAGAGTTTAAAGAGAATGCTGTGGACATACCGGA
