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CIS-REGULATION

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  1. Gene 'KH2012:KH.C1.183' > 
  2. Region 'REG00000578'

Cis-regulatory Region

Name

CNGC -3691/-1350

Short name

n/a

Region ID

REG00000578

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(complex_region)

Author

Kusakabe team (2009-12-12)

Annotator

Delphine Dauga (2010-01-11)

Curator

Delphine Dauga (2010-02-28)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.


Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C7.605 (CNGA1; CNGA2; CNGA3)

Construct(s) made to test this region

CONS00000548: pCNGC -3691/-1350::EGFP

Show in situ data
Overview of functional TF binding sites in this region

411,006413,347

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [411,006 / 413,347] on scaffold KhC7

Sequence from JGI V1.0

Show sequence

Length: 2,342

TCTTGTTGGGCGGAAAATCTCACAACAATTTAACACCTTACCTAAAGTAAACCAATGAAA
CCTGTATCAACCTTAAACAGAAAAGTAACCTATATCGTTACCTAAATATATTTGAATGGT
AAATCTTGAAGGGACAGTCGCTTTTAAAGTAAATATGAGATCAGTCTGCATATTGGGGCA
ACTTCTTCGATTTTCTGGTGTCTTGTGAACTGCCTAATCATTTCTCTTGGGAACTTATCA
TCGTATTGTTAATACTGCGAGACTACGTTCGAATACTACAAGTGTCAGAAGCTTTTGTAG
CAAACATTCATGGCTGAATTATTAATAGGAACACCACTCCGGAAATCTGAACATTGCTTG
GAGTCAACTTTAGCGGAGTTACCTATAAAAGTATATACATTACCCTCGAACAAAGAGTAT
TTAAATATTAACTATAATGAATGATATTTTTTGTTAAAGCCACTAATAGTATTCCTTAAC
ATCAATCGGTTTAATTGTATAATATGCTGATGATGTGTCCCTGGCAAAGTGGACAAGACA
CAATTTCCATTTTATCTTAGGTCGATTTTGCTTGCGTAAATCCTGGACCTTCAGAAATCA
CTGAATGCTGTCTACGTACTCGCATTGATTATAGCATAGCCTATACATATGTGTAGGCTA
TGATTATAGCAAGCCCCAACGGCAAGCTTTGTATGAAAAAGGGTAGATTTTCTAAAGAAT
ACCGTAGTGTGAAAATGGGATAAAATAACAAATCGATCACCCAAAAAGAAAGAACATAAC
CTACGAAAATATCGATGTATTAGGTTGTTAATAACTGCACGTGCGCTAACGAATGCGACC
AGCCGAAAATATTAATGTGTACCCAATTAGCCTACAGTAAAAAAGAACCACATCTGCTGT
TTTTTGAACCTAAGGGACCATAAAGTGCTTACACCTCAACTAATTTGTGTTTGCATTAGT
GAAGTGTAGCAACACCTACCGTAAATTACATAATGGGGTACGTATGTTCTTCCGGTTACA
TGTCGAATACTTAATGTGTCAAACTTATTACAAGAAATAAATTAGCTAATAAGAATGTTA
GTAGAGTGGGGTAAGTTCGGACTCGGAGTAAGATGGTATATTTTAGACTTTGTTTTTCGG
GTACTCATTTGATGACAGATGAAAAAAATGTCACAGTATTATTCGACAATATTTTTTATG
GTCCAACAAAGTGCGTGGAAAAGGCGGTTGCTGTTGTTAGGTATTCAGATCCGGTTTTGA
ACGAATACAACATTTTTCAATGGCTGAAAACTATCTTAAAAATAAGATGTTCATTTTCGT
CATATATTTCGACCTTACTTAGCCCATCCTACTATAGCCTATATAGTCTTTTACGACAGT
ATCGATGTCGAATATTTTACGTTCTCACCCAGTCTCTCAAGGTACATTTAAATCCGTCAA
GGACATTTTAGATTTCTTATAGACATTCTATATCGGTTACCTCGGCACTGATATAGTAGG
GTGGGGAAAGATGGGACACCTTTAGCACTTAATATAATATCCAAATATCCCGATCGAGTT
TTGAACTATTACCAACGGTCTATGGCAGTCGCGAGGATACGGTTATGCAATTTCTTTGTT
TAGTTATAGGAGAAAAAAAAGAATAAATAGGACGAGAAAATAGAATGAAATTGTGCCCCA
CCTTCTTCTACCCTACTAAATATATACATAACCTATGTAATTTATATTTATCTCCTCGAA
AATGAAGATTATGTATCGCAGTGCTCTTCAACCGTTTTGGGGTTGGTGAACTCCTAAAGT
TGTTGCGACGAACTCATGCACCCCTGATTGCTTCAACGTAAAGCTAATGAAGTCATCAAG
GAGAAATGCGTACGAGAATAAGCTCATGTTTAATCGAAAAGCACCGCTATTCAAAATCAT
TACAAACAGGTGGTTTGCGGTTAAAGAGAAGACTAGTTTCGCAATTCCCAGTGATGCAAG
ATATAGAATTCATATAAAAAATACTGTAGAAAAGTGGCTAAATTTAATAAAAATGTTCAA
AACTGAATATTATTGGTGAAAATTTTTGAAGTTTGTGATGCACCCTTGTATACCCTTTTG
CACTGGTGCACCCCAGGCATATTTTGGTGCACCCTCACCGTGCACACCGGTCGAAGAGCA
CTGATGTATCGTACTATCGTCCACGCCTAATAGTACACAAAAAATGTACACTGTGTCCTC
TTAGCCTCTAAAAATAGCTTTATTGGTTGGTAAACAACAACTTGTGACATTGTTCCTGTA
AAATAATGGACATGACATGTTATATCGACATACACATTTTATTGCGCCAACACCGATTTT
AA

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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