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CIS-REGULATION

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  1. Region 'REG00000577'

Cis-regulatory Region

Name

CNGB -1738/-260

Short name

n/a

Region ID

REG00000577

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(complex_region)

Author

Kusakabe team (2009-12-12)

Annotator

Delphine Dauga (2010-01-11)

Curator

Delphine Dauga (2010-03-15)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.


Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.L42.6 (CNGA2; CNGB1; CNGB3)

Construct(s) made to test this region

CONS00000547: pCNGB -1738/-260::EGFP

Show in situ data
Overview of functional TF binding sites in this region

58,22859,706

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [58,228 / 59,706] on scaffold KhL42

Sequence from JGI V1.0

Show sequence

Length: 1,479

CTCCGTTTCGTGGAAAACTCATTTTTCAAATCTAAATAAAAACACGTATTTTCGTTAGAA
CAAATGGCGCAGAAAACATTGTTTACATTGCAATGCGAACTACACAGTGTATTTAATGTC
AAGGTAGTGTTGAATATATAGTTATTTTATGCAAATATTGCGAAAGTCTAAATTTTTCGC
GCGTCAACAGACGAGACGCGAGGTAACAGCTTAGGGCTTTCCCCGCCACAGCAAGAAACT
TTGGAAAGTTCACGCAGACACATGTTGTTAAAATTCATCCCAATTAAATGTGATGCAGAT
TAATATAAATCATTCACAGCGTACGAAAGGGGAGGCAGGTCTTTAAATGAGACTATGAAA
CTGTAAAGTGAATACATAAATGACAGACCAAGCATAATTTACAATTATAAAATACGAGCT
TACCTTAAATCGAGTGAGTAGCAAAAATTTGCAAAATGTCGTTACAAGCTTCGAACAATT
GAAATCAATAGTTGAAGTCGCAATGAAAATAGCTTCAAGTCGCAATATAGAGAGTAATCA
CCAACAAGTTGGATAATAACTGTCTGTTAACTTCGAAATGTGTACAAGCTATGGAAAAAT
TTCCGATCGCAGCGTATATATATTGCCGGATTTTTTTTTCTGGATTGTGACGTAACAATC
ATAATACCAAGGAAACATTTTTCCTGCATATTTTTAACCAATGACAATCCAGTATGCAAC
GTATCTCTTGACAACGAGTTTGCCGCAAAATTTTTCGATTTTGCGGGAAATTGGTTGCTA
AGAATTTCTGTTCGTAACTATGCACCACCTTTTTTGTGCACCGTTGCCGTTTGCCACGCC
CCCTTTTATGTTTAGCATATTTCGTTGTCATGCAAAATAAATGTAAACCAGCTTACCAGG
GGCATGCCTTTTGCACACATGTGGTATAAATATGACCATTGCCAAATTGTTGTTAAGTGT
ATGAACACAAGCGTAATACAACACACGCTTTCGCCCAAAAACACAACACGTGCTTTTACA
AAAAAAGTAATAGCGAATTTGCGTATTGTTTTTAATTTGCGTGTTTGATATAGATATATG
TGTCAGCTTGTATGTGGGCCATACATCAACACGATATGTTAGTTTCCTGTTCAAGCCAGT
TCACTGATCATGGTCAGATTTTAGAAAGAGAAGAAAGCAGATTAGTGGAAATGCCAGATT
AATCTTTAAATCCCCCTTCAAGTGCAGTGGTTGTGCATGGATTAAACATATGGCATTGCA
CATAAATGCAACAACAGTGAGGAGGAGTCATTATACGTTATTAAAGGTATGGTTGAGGTT
GTTTTTATAGAAGAATGGTATATATGTGTAGAAAAGAATGTATTGGAAACTGACATAATA
CATTTGTCAGTCGGGCATACCATAATACAACATGGCAGTTTATTATCAAATTCACCAAGA
AGTACGATGTAATAAGCTGTCTGTGTCTAGAGTCCAGTA

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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