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CIS-REGULATION

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  1. Region 'REG00000576'

Cis-regulatory Region

Name

Ci-CNGA -2361/61

Short name

n/a

Region ID

REG00000576

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2009-12-12)

Annotator

Delphine Dauga (2010-01-11)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.



Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C2.249 (CNGA1; CNGA2; CNGA3)

Construct(s) made to test this region

CONS00000546: pCi-CNGA -2361/61::EGFP

Show in situ data
Overview of functional TF binding sites in this region

2,428,0772,430,499

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [2,428,077 / 2,430,499] on scaffold KhC2

Sequence from JGI V1.0

Show sequence

Length: 2,423

ATTGGTCGTAGGTTTTTCTCTCGTGGAAAAACATCAGTTGATTTCCATGGTAACTCAACG
AATGAACTATGCATAGAACATAAAGTTGTATTTATACTTCTTAATTTTGCTTCATTTTAT
TTTGATATAAATCCATATAAATCTGGTTAAGGCTGTAATTCTAAACCATAGCTTCTGGAA
CTGTAGGTTAAATTATGACAACAAAGCCATTAAATTTATTTCAGCACGGGGTATTATCGA
CAGTGACCAAGGTTTTGTCCCTGCACATGGTATATAAATGAAACTTTATGCCAGTATACA
CAGTGGCGTGCAGCGACTGTCTACCTTGTACGTATATACATCCATATAAATAAATAATGC
TTAAAAAATTGTTTTGACTCTGAATTTACGAAAAAAACTTGCACATCAATGTATATATTT
TTCTTGTACTCACCTTGTCCACACACTAGATAAGCAGAAGTTACGATTAAAGATAAACAC
AAGATCAACATCGTGTTATCCTATTTTTATCAAAGTTCGCGTTTTTCTATTTTTGGCAAG
CAAACTGTAAATGTAAATAAATAAACCAGTTAGATTCTTAAACTTTGTGGCTATATATAA
TATGTAGGATTTCAACTTGTACTTCGGTTAGTTATAATTCTGTATAAATATATCGTGCAC
TTAACTAATCAGAATAATATGGCTGTGCTGGAAATTCGCAGCCTTTACACAGCACCCTGC
TTGTTTATGACACAAAGCAACTGACAGTAAAAAACACGTCATGTTTTCAATTTGCAGCAG
GAAAATAAGAGGCGGCTTTATAAAAACAGTTTAACCGGGGATACCACTCAATCGGTTGTG
ATAAGCTACGTTTGTGTAGGTGGCTGGTGCAAGAAAAATCAGGATTGGTGATCAAGCTTT
TAAAAACGAATAACCGAGTTAATCGAAACTATCATTTGTAAATAAAATTCATAATACGTA
CACCTCAAGAACCAGCACATATATATGCCGTCTACCTATACTGTCCCAACAGTTATACCA
CGGTGTTTTATATATAGTAGTACGGTGGGGTAAGATGGGACACTTTTAATGCATAATATC
TAAATATCCTGATTATGTTTTAAACAATTACCAAAGGTCTATGGGAGTCGTCAGGATACG
GTTTATAATTCTTTGAATGTACTCTGTTTACAACCAAATGGGACGAGAAAGTAGAAAAAA
ACGGTGTCTTATATTTCCCCACCCTGCTAAAACTACGCTTAATCAAATACAATACTATAT
AAGTCACATCCAAAAAACTCAGTGTCGTCATTTAGTGTATCATAAAAAAAACATAAATGC
GAATCGTGGTTTCTGTTATTTGTACCGAACAATTCTCTTTATTTACTATACATTGCACCG
CCTATGGTTTAGTCGTTCCTGTTTCGGGGCGTATGATACTCATTTGTCGCTCGAACCGCA
TAAAGGTGGCTGTACACAGTATCCAGCATGCGAAAAGTCGTATTCAAACCCATGACCGAC
TTCCGCATGCGGCAGCGAAATCCGGACAAACAGACAAAACGGACGAATTCCAGATACCGC
GTCTTGCCGCAGGTTCCAAAGCTCTGTATAGCTTGTCGACCCTGCTGTATAGGCAGTTCT
CCTATATACCCAGAGCTTTGTCACAATGCGGTCGGATTTTCATCAGTTGCAAGTTTAGAG
AAGAATAATTGGTACTTTTAGTTAGTAAGTTAGGTCAAATAAAAGGTTTCATAGCAATAG
GTTAGTAATGCAGATAATTGGAAAATTCCCTATTATACCTTCAGCAGCAGCATTGCATAC
AGGATATAGGCATTTTGGAAATATAGCATATATAGGCATTTTGGAAATTCTAATCAAAAT
TGGACAATAGTAATAACTTGTTAAATGGTTATAAGGTATGTAATGTTTAAAGTTTTTTAT
TATAGACCAATTAATTTCACGCGTTTATAAATTCAAAACTGTTTATTTCGATTCTGCATT
GGTTTTCTCTCTATGTGTTTGCTCATTACATGCGACTGTTGGTCAGATGGCGAAAGCAAG
AGCGAGCAGCGGATTAGTGCGTAGTATGACAGCAACAGATTTGCTTTCACATAATTCCTT
TGTTTCATATCGATCGGCAGCAGTATTTTTGTAATTCGTTGCAGTGGTCATAATGGTGGA
CCTTGTTTTCTATGTTGTTTTATTGGCAGATACCAAACAGAGGTTAATTTGCGCCTAAAA
GAAAATTAAATTGAAACAGCAGTGCTGTATTGCAGCAGGTGCGAGCGGGATGAGCATATT
TTGAGTTGGATTGGAATTTACAAGTTATAGTTTGATACAAAGAGGTGCCGCTTGTTTTAA
CTGATTTTATAGCTAACACAGATTTTAGTGTAATGCAACCGGTTAAACATAGTATAATCT
AACTTTAAGACATCTTGGAAAGT

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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