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CIS-REGULATION

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  1. Region 'REG00000575'

Cis-regulatory Region

Name

Ci-Prestin -1706/-251

Short name

n/a

Region ID

REG00000575

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(complex_region)

Author

Kusakabe team (2009-12-12)

Annotator

Delphine Dauga (2010-01-11)

Curator

Delphine Dauga (2010-03-12)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.


Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C7.65 (SLC26A2; SLC26A4; SLC26A5)

Construct(s) made to test this region

CONS00000545: pCi-Prestin -1706/-251::EGFP

Show in situ data
Overview of functional TF binding sites in this region

1,543,7701,545,225

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,543,770 / 1,545,225] on scaffold KhC7

Sequence from JGI V1.0

Show sequence

Length: 1,456

CTTTACCTGCTCCCTGTTAGACATATACTGAGTTACATTTTAACAAAAAGAAAATAGGTG
AATCCTTTTTACACTAAGCAAACTTTTTACATAGAAATGTACAGATGACTTATTCTTACT
TTATGCTTTTTTGTGGTGGCTTGTGGTAATCATATTCATCCTGAATCTGGTATTCTGTTA
GTAAATCATTACGTTCCATAATCGCTGTGCAAGGTTAGTTACAGACGAGAATAATATAAA
AGGAACACAAGCTACATTACATTTGCTGCAATCGATTGAACTTGCGGTTATTAGTTAAAT
ATTAAATCAATACAGACACATGTTAAACAAACACAAGTGTCAGCACTATTTTAAGCCACA
ATAATACACTATTTCGTTTTACGATGCCGGTTACTGATAACATTGAAATATTAAAAATAC
TGCAACCTTGCTTCTTATCAGGTACTAACTAAATATGCTTCCTGTTGTACGTTAACGGTA
TCAAACTACTGCCTTTTGTATTGAATATATGGTCTTATAGGTCACACTAGTTTTTTCTCT
GGTCACATACGAAACGCTATTTCCCGGTTGTGGGGAAATTTTGAAAAACTGCCTTGTCAC
AACTTCATACCTGAGTAGTTTTTAAAGAATGTGTCTACGTGATCAAGACATGGACACTGC
GTTTGCGTGCTGTTGCATCATAAATGGTAGTGTCATTCGTTGTCAGAATGACAACGCGGT
TTTGTACAGATAAATAGAAAATGCATTATTTGATCAGCATTTAAGTGACATGTAGTTCCT
CTTGAGCTGCAGAAACCGCAGTAGCTACAAACAAGCAATGATATTCATTTATTAAAACAA
GGCAGCTAAAAACATAAACCGCAGACTCTTGACAGCCTAGGTATAACATTCCACAGGTAA
GTACATAATTATAGCATGTATCTCTAAAACCTAAATTTATTAAAAAGTAATAGACAACCG
AACACGAGATACTTACACAACAGACTAAAATTACTCACACACACTCATCAACGTGTGTGG
TTCATTATCAGCTGATTGGATAAAAAGAAAAAGGTGCTTGACGTAAAACAGTTCATGATG
ACATCATACGCATTGGCTCAGAGACCGGAAATTCTGTTTTACTCGACTGTGTAGTTTATA
AACGGTTATTTGTTTAAGCTAATTGGTTGCAAACTATAAATAGGATCACAGTCTTTCGAG
CAATACTCGTTTTAATCGAGATATAGCCTATAGTACCAAACAAATTGTATTAATCATACG
GAAAGTATCAATTTCAATATTTTCCGGCCGCAATAAATAATTCTAGTTGTAAACAAATCA
ACGAGTTTACTTTAGACATTACCTAGGCAAGCATTGTTTACCAATGAATTGTATTCGTTT
CAGCTAAACATAAGTTATAAGCTCTGTAGCTTTACAAATGAGTACTATTTGATAACGTTA
CTAATAAGCGAAACGT

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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