- Region 'REG00000572'
Cis-regulatory Region
Name
Ci-tyrpB -1693/7
Short name
Ciinte.REG.KH2012.C5:2277451-2279138|Tyrp1a
Region ID
REG00000572
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Kusakabe team (2009-12-12)
Annotator
Delphine Dauga (2010-01-11)
Curator
Delphine Dauga (2010-02-26)
Conversion to aniseed format of DBTGR database entry from Kusakabe team.
Transcription start site is based on the start of the first exon of the JGI transcript model.
CONS00000542: pCi-tyrpB -1693/7::EGFP
2,277,4522,279,138
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,277,452 / 2,279,138] on scaffold KhC5
Sequence from JGI V1.0 <br />
Show sequence
Length: 1,687
TGTAGAATAAGTACAGATCTTTCAACAATATTAGAAGGCAGAATATATAGTAATTTATTA
ATTAATCAAAAACTGTAAAATAGTAAGTGGTTAGCGATTGTAGTCGTCGTAAATGATATT
CTAGGTAACTACACTTGGGTAGTTTATCTCTACATGCAAACCAACCGATGAGCTTGAAAT
AGAGACGTTGCCGCTCCATATACCCACTCGATTTTGCCTTCCTTACTGTATTAGTTGCTA
CTGGTGGAGGTACTTTCACTGCTCTGCTGTTCGAACTGATTTCGCAGCTTTTATAATGAA
ACTTTTCATGGGAGTGATGAATTAAACGGATTAAAAAGCTAAGCCTAACCGGAGTCACAA
GTTACTCAAATCCAGCAACTTATTTGTTCGTTTGTTCTGTAGTGGATTTCCTTCTTAAAC
GACAATGTAATAACTGCGGGTTGTGTGATCGGTATTGATAAAAAAGTTGCTTGGTATTAG
TAATCTCGGATGTTCTGATTACAAACTTTATTGCGCAATTTAAACAATGAATTGCTATGT
TTAAATAAAACCATAATGAATGTTGTGCATATTTTTATGAAGTTGGCGTTATTTTATAGT
CGTGGTCTTTATTTAAACGCTACAGTGTCACGAAATAACATTGTTGTAAAGTCCCATTCT
ATCTCTTCTAGAAATTTCTCGGAATTTCGTGGGACTGTTCTGAGTCTAAAACCGTTTGAA
ACACATGTTCTCTTGGCGGCCATATTCACATCGGTTGGAACAGAATGAAACAAGAAAGAT
ATGGCCATCCTCGTGAATCCGAGTGAAGATTCTATTTAAACGGGACGGCCAAACAATCAA
ATTCAGCACTGATGCTATGTGTTAGCGAGGTGAGAGTTTGAGTGAATTTAGGCATACGGT
TTGTGCTATGCAGTAGCCTATGTGTTAAGCGAAATATCGTGACCATAATATTGCGCAGCT
CCACGGAAAATATCGTTTTAAGTTGTAAATTTAGTTTTTTTGTTGAGTATCTTGTGTCGG
AAAACCTTATGATTTAAGTGTATAAAATCGACTATTTCGTCAAAATGCATTCCAATATCG
TAGTTCGTAGCAACAATAGCAACTTAAATAGGGCGTGTTGTTATATATTTGTTGGGGCAA
TGCATATAGATTGTGTTTTGATTTTTAACCGATCTCGTATAATATTCAGTATTACGTAAT
TTTTATATAGTTGTTCAGTAATATTTAGGTCCAGTTGTTGTAGATTTTAGAGTCTGAGGT
ATAGCCTAATAATAAATACTGTATATACAGTTTTTAATGATGTATATAATGATTTTTAAC
ATCATTACATCAACAGCGTGGAATTGATTTTGAAATTCGACAAGACTTTTTTTAATTTTT
TGTGGGGTGTTGTGATTGGTTGTTAAATGTTTTGGTTAGACAATAGTATTTTGTGTAAGA
TAAGTGAAAAAAAACACAGTAACTGCTTAAACCTGGTGTCAGTGCTCACATTCAGACATT
ACATTTTTACCAGTTTATTTTAAGAGACAGGTTGTAATGTTGAAATCATTATACTTGTGT
GCAGCTGTAACTGCCTGACAAAACTTGTTTAATTTGTTTAAAAAACATAACCACCCAATT
ATTTTCTTATCAGACACAATTAGGCTAAATTAACAATTTATCAAAATGATGAACATAGAA
ACCCAGG
