Login
Help

CIS-REGULATION

Submit your Data

  1. Region 'REG00000570'

Cis-regulatory Region

Name

Ci-tyrosinase -1509/1

Short name

n/a

Region ID

REG00000570

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2009-12-12)

Annotator

Delphine Dauga (2010-01-11)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.


Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C12.469 (DCT; TYR; TYRP1)

Construct(s) made to test this region

CONS00000540: pCi-tyrosinase -1509/1::EGFP

Show in situ data
Overview of functional TF binding sites in this region

4,104,8884,106,397

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,104,888 / 4,106,397] on scaffold KhC12

Sequence from JGI V1.0

Show sequence

Length: 1,510

GGTGTCTCCAGGCAGTTAAAAACGTCGTTAACTACTGATGTTTCAACTTTTTCTAGCGTT
TACCTAACTTTCTACACAACGTTTTATTTATAGAATCAAATCATTGCCCAAGTTTTTTTG
AAATCCGGCGTGACGCGCGCTAGTTTCCTACGTCATTAACAATATATTCGTATAGGACCA
ATCATTTTGTATAGTACCACAATTTAGGATTTCATTTTTTAGTTGTACGGTGGTTATTAC
AGTGGAAAAGAAATGGGATATTAAAACCCCTTTAAGGACAAACATTTATGTTTTCCACTG
TCATTATACCTCGGTCTTTGTGGGAGTAAAAACATAACTTTTATAAACAGCGTGTGCGAA
AGTATATATTTATATTGCTTTTACATATTCTTATACATAATGATACCGCATATGCAATAG
GTGTGTTTTAAAGTTATTCTAGCGGTATAAAACGGTAAATAAATGGTAAAATAAAAAAAA
ACTTTACCATTACTTAATGCTTAAGGTAAAAATCAGAGTCCGTATATAAACATGTTTATA
TACGGACTCTGGTAAAAATTATAGCTTTTGAATGCAAACCATGCTAAAATATCATAAATA
GGAAAATTGCGTTTCTTTCAATAAATCGAATTGTGTTTTAAGACCGAATGTCACTTTGTA
GAAGTATTTTGCCTTTTGAGAATTACCAGTTCCTATTTGCCGCTGTTTATTCTCTGTATA
CAGTGAAACCCCTGTACGCGACGGATATGAAACACTGTAGCGTCAACAGTATATCGTAGT
CTGAAATATGTCAACGAAGTTAATATTGTCTTATCTCGTTTAATTGTAATATTCAACATT
TAGTAAACCGGTTTCTATTGCAGCAACAGAAACGTAAGTATTCGTCAATGTCTTATAAGA
TTTGCTTTTGTTTTAACCTGTTCTGTGCCACTTCTATAATCATTCGCTTACAATGTTTTT
CTGCAGAAATCAACTGAACTGCCGAAATAATTTTAAACCAAGTCTCTGAAACTTACAAAA
ATACTGGCACGCGTATTCGCCTGGTTTCAATGCAATAATTTCTCGAGACGGTCGTCGTCT
CATTGATCTGAACTTAAAGGTATTTCTGCCTCCGACATACATATATTCTTCTTAATAAAC
TATTATTTTTAACAGTGCAATAACCGTAGTATACTGATAAAACACTACCAATATAGCCTA
ATATTCCAAAACCGTCTCATATACTACAATGTGATGAAGGTAATTATTTCACTTTCAAAA
TGCTACTACAAGGTTTCTCACATGATTTACATATCGAATAAATAGGAAACGTTAACCCTT
GCATATGAGATTCATTAATCCACCATTTCCTTTACGTTTCATTTTAATTAAATTCCATAA
AGCTAATCCCGACACGCAACTCGTGATAGGAATAAGAAATAAGGATTACTGAATGCATTT
GTAAAATCAGATGGTATATAAGGCACAAGTTATGTCTTGTGTTCACACATTTGTCTAGCA
CTTCCAAAGA

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

Back to Top