- Region 'REG00000568'
Cis-regulatory Region
Name
Ci-GnRHR1 -5392/-304
Short name
n/a
Region ID
REG00000568
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(complex_region)
Author
Kusakabe team (2009-12-12)
Annotator
Delphine Dauga (2010-01-11)
Curator
Delphine Dauga (2010-03-12)
Conversion to aniseed format of DBTGR database entry from Kusakabe team.
Transcription start site is based on the start of the first exon of the JGI transcript model.
3,989,3563,994,444
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [3,989,356 / 3,994,444] on scaffold KhC3
Sequence from JGI V1.0 <br />
Show sequence
Length: 5,089
TATGCACTGTTCGCTTATGATAATCGGATCAGATACTAAATGTGGTTCAAATCAATTTAA
AAGCAACTCTGACTTTATCACCGCTGTAATTGAACGTTAATTAAATATTTAATGAGCTAC
TAACTTGCATGAGGTTAGAATGTAGGATACACATAAACAACACTACAGACATTGTACTGT
TTTCTGTTTTGCTGCTGCGTTTAACTGTTCAAAGTACAATTAAATCTTCCCAGCTATCAG
GTACTGTACAGAACAGAGTTCATGTAAATGCAAAACAACTGTTTTCTCGGCTTACAATAT
ACTTATGCACCTCAGTCAGAATGTTCTACCTTACCAGCTGCAATGCATACTATGTGTTTA
GTGATGACAACCATATAAGCTTTATCGTCACCCGCACCGCGAAATATCATCAAGTACTCC
TGTGAAAACACTCAACAAATGACTGGCGCATGACACTGTATATGAGTTTGCTATACAGTC
GGATACTGTTATGTAGAAGCATGATAGGCAATCACGATTCACGTTCATGTACATCGTTGT
AACAACACTAAACGTACATGTCTGTCGTCATCAAATTTTAAAAAGCAACAAAACTAACTA
TTGTTCACGTACATCGTAACAAAGAAAACTACCTTGAACGGTGCCTTGTTCAAAACTATT
TCCTATTTATCGTACAGCGCCGTGTCGTTATATTGGTTCTAAGAACAACGGTCAGACCTA
ACTGCTCCACAAAAGCTTCGCGCAGTCCCTACTACTACATAGCGACCGGTATGCCGGAAT
AGGTTTATCGTTTATGTGAGGGTGGCCTCAGAGACACCTTTACTGTATACCTTTCCTGAG
ATATGATCTTTTGTATCGCACTTAACTTTAAAGATAACATCAGTCGAGAAACGAGCACTG
CCAGCAGGCACAAAATCTTCGCGAATGGGTACGACTTACGCCGCTCACTGCCTTATATGG
GATAAACCATACGCCGCTCTGCATGCGACATGCATGTGGCTAGCTTGCTGAAGCATGTTC
TCAGATCATATTTGTCAGCGTTTTTTTCTGAAGTGTCACTCGCTCTAATTTCACGGGCGC
ATCAAAGTGGATAACGATCTTTCTCGTACAGGTTCGTGACCTCAATGAAACAAAAGCTCT
TTTCTCTCTTCTTACTAAAGTACAAATTGAACGACTTGTACTGTCTTGTTTATACGTCAA
AATGTAACTTTCGCACGAGGCGAGAAAAAAAGCGTAACGAGTCCACATATTTTGACTATC
GCCAATAAGAATAGCCTTGACCTATAATGTACCTGTTGTATTTTTCTTGCTACGCTCTGA
TGACCACACCTGACTCACAAACTTGTAAACAGATACTCCAGGAGAAAGTTACCGTCTATA
AATAACAATCTCAATCGTGTTCATTCATAACGTCGTAGCAGTAGAACATCTACATTCTAC
ACTATGCTTGGCCTCTCCCATTGGCTATATGCGTATAACAACACCCCTATTCACTTTTAC
GTAACACCAGACGAATATGCAGACACATAATAAACCCTATAAGGCAGTTTACTACAAACA
GAACAGTTGCGCAACTAATGTCCCAAGAATTTTGCGCAACCCTGATTCACCCTCACTTCT
ACGAAAACTGAAAAACGACTTGACCGCGGTCCAAAACACGCGAGACCAACGTGGCCATCG
CATTCCTAAATATAGAAAAGTAACTGACCGGTGATAGTCGAATCTGTCTCGCCTTAGGGC
AGGTTACCCTTTCATAAAAAACTACAATGTTTATTTAATTTTACAACGATCGCTACCTTA
TTTAGCCGTTTTAGCTCTGCTGGCCTCATTCTGAGGGGCGGCCGGCCACTCTTTTAATCC
GATCGATTCGAAATGACTTAAGCAATGGCATTCAAAATCCTGTTTAAGGCATAATATCTT
CTCACGCGAGGTACCCCAGCTTCCTCGGTGCCAACGCCGGTTATCTACGATCTCTATGTT
TCGTGCGAGATATTCGTCGCCGCCTATTCGCTGCGGTCGGTTCATGACCGGATTAAGCGA
CCTCCGTCATAATCGAACGTTCTGACGTCACAAAGGCCCAGGCTCGCTTAATTAGCTGCC
GCAAAACGATGTGCGGCAATAAGATCGACCAATGGGTCGTAAGCAACACCGTAGGCAACG
AACATTCCCTATTTGTTATAAACATGGCATTCCTAGATCGAAGTTGACTTATGTAACCTC
AAACGTCAGCGACATATGTACCAATGCGGTCCAGACAAGAGCGTGATTAAAATAAACAAA
CCGCGTGGCGTCTTCAGTAGAAAAAATGTTAACACGTCCTGTATTTTTTAGGCTTGGAAA
AGCTGATATATAGTACAATAGGGTAAAACGGGACACTTTAAGCACACAGTATCCAAATAT
TCTTATCGTGTTTTAAACAATTAACAACGGTCTATGGAAGACGTGAGCATACGGTTTAGT
ATTTCTTTAAATATTCTTTTTTTTCTATCAAAATGGACGAGAAAATAAAATGAAAATGTG
TCCCATCTTTCTCCACTCACTATACACTTCGTTTTTAAGTATAGCAATTTTCAGTATTAC
AGCATGAAAATAGAACTCGGCGCTTGGTGAGGATCGGTTACGTAATCATCACTAGGCGGG
TCATTGCAGCCCTGGATGCCGCAGATGCCCATCAACTTGCCCCGGGCACGGATGCACTAA
TTGCAAATACGATGCGTTCGCTCTAAAAGATCTTAAGAAGCATTATTTTTGACAGCTAGA
TCTGATTATTTTCTATTAATAACCTTCCTATGCACGTTGAATGTCCACATGAATTATGAT
ATATATCTCCATCACTTCCCAGAAAAACGGCTCAGTAGATTTGGGCCGATGCTTGCATAC
AAAATAAACGGTCCCGGGTCTCTGTCAATCATAGTCGCTCATCTATCTCAATGCAAGTCT
ATAAATCAACGAAATACTGAACTTTATACTCTTCCCTACCGTCAATCTTTCAACTGCGTC
TGATCTCTGATGGTTTTCCATATCTCTCCAATAAAATTATCGCCTCCCGTATCTGACAAC
CCGGCTTTTCTGATAACGGTGTTGCAACGTGCATATGATAGAGTCGGCCGCCGAAAAACA
GTCGCCTGTGTTTTCAGCGAACCCCCTGCTATTGGTGCAAGCTTGTTTAGATTCCGAATC
AATTTAGCATGCTCGAGGAGAGAGCAATATAATCTAAGATACAATCTCTGTCGCGCTATC
TCCGCACGCGAAGTTTTTAACAGCCCGTTTGCCGACAAGGTCTTTACCGAGGTTAAGTTT
TGATACACAGTATACCAAATACACCGCGTCGCTTCTCTTTCCTATGGCCAAAGAAACGAA
TTCGTTGCTCAAGTTCGCCTTTACCAAACCGGGCGTATCCTAGGCTATATTTAAATCGGT
ATTTTCGGATTCCGCTCGCCGAGTTATGACCCCACACAAACAGAACACGTCGAGCAGTTT
ATCTTTTGGCAGAATCCAACGAAGCGATTTAAATTAACAACACGCTGGGTTCATATAAGA
ATCAAACACAACAAGCCGTCAGGCGCTATTACAAACGAACTCTATTCAGTGAGCAAGATT
CGTTGATGCATTCGTGCTGATAATAGTTCGCTGTCGATCTATATTCGTTAATATGGTATA
GCTTATCCGCTTCTGCAAGTGGATCCTGACCTTACTAAACATACCGTGTTTTGTCAGGCT
GCCAAAATCTGTTTTACGAGATCGTGTAACGTAAAGATTTGTTATCAGACGATCAATATT
TCCTTTTTCAATCGACAGATACCGTATTTGCTAAATGTAACTCGATCGTCTGAATGAATC
ACACGCTTTGTGAAGTTATACTTAGACGCACTGACACGTCTGGCTTCGCGAAACTAACTT
TACTGTATTCGAGATATTGTGCCAACTCTGGCATAAATCTTACCTACTGTGGGACCTCTC
AGCCACTCTATAGGACCTCACCAACGTAGAGTAGAACTTAACTCTATGGTCCTCTTAAAA
TCAGGTGCGACATTATGCTAAAAAATTCTGCCGGTCTCCTCTTCGGTTTGATTCCTGCAA
CTCTCAGCGACAGCGTGGTTTTAATCCGCGTTAAATTGGTTGTTTTCCTAACTTTTTCAC
CCCAACATCCCTCGCCGAAAGAGAGTAGCATTTACAGTATAAGAAGCTAGCGCATTACCC
TTGAATAAGACGCGAGCCGTCAATTGTCTCTAAAACATCAGTCGCTTGTTTTGACTCAAA
ATAAACGAGTTTAGAATCGATGTTATTTCGAGACGGAGTTAAAATTTGTCGAATAAATAA
TCAGATTGCAGATCGAGCACGTGTGTTGCCCACTGCCGTGCAAAACTGCTCTTATCGACC
GGAATTAGATGCTACAATGCATTGGAATACACGGCCTTGTGTTGTGGTATATTACCCGAG
TTAGAGCTGTCACCTTCAGATCTATATTTTATATATGGTATATATAGTAGGGTGGGGGAA
GATTATAGGACACCCTTTCTTTTATTTTCGCGTCCAAGTAGGTAGTAAACAAAGAACATT
TAAAGAATTATAAAACATCATGCCCATGATGACTCATATATAGAGCGTTGTTATTTGTTT
AAAACACGATCCGAATTTTTAGCGCTAAAGGTGTCCCGTATTCCTCCACCCTACTATATT
TGTTGCTGCGGCCTTACGCAAACGTTAGTTGCATTTCCGACATTTCATCTTTTGACAGAG
TTTTAACAGAACACCATTAGTTATATTGCTACGTTTTCTGATACTTTTTAATATATAACC
AAAAGCCTATTTTACACCCAAGTGCTACTAAAAACGTAGGTATACCACAGTGAGTACAAC
TAATGGTGTACCACAGATATGCATACCATATATATTACACCACTTACTAGCATCATCAAT
CTTATATTTAAATAGTTTTTAAGCGCGGTATATCGAGCCCGATTTATAAAACGTATCGCT
GCCATACCAAGCATAACGTATTGCACTAGAAGAGCTTTGCTAATATTAGAAAACAGTTAT
GGCCTATTTTACAAATACCTTTGCGCAATTGCTGACTACCACATATTCT
