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CIS-REGULATION

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  1. Region 'REG00000565'

Cis-regulatory Region

Name

Ci-unc119 -2114/17

Short name

n/a

Region ID

REG00000565

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2009-12-12)

Annotator

Delphine Dauga (2010-01-11)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.


Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C4.811 (PDE6D; UNC119; UNC119B)

Construct(s) made to test this region

CONS00000535: pCi-unc119 -2114/17::EGFP

Show in situ data
Overview of functional TF binding sites in this region

4,867,5134,869,644

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,867,513 / 4,869,644] on scaffold KhC4

Sequence from JGI V1.0

Show sequence

Length: 2,132

ACAAGAACTAGTTGTACCTGTGTACATTGTTGGTTTTATTAGGCTTTTGTTTGAGAAACC
ATTTTTTTCAAACTATTTGCAGTAGTTGCACAAAGTTTATTTTAAGCTGTCTAATATTTT
TTTAATAAAATATTAGACAGCTTACTTTTGGAAAAATTTAACACATTATTGTAACACCAC
AAAATTACTGCTTGATTACAAAACAAAACCGTTTGCGCCAATAAACAATGCTATTTCTTT
TAATCAAGTCTAAAAAATACATATCTTAGAAAGGCAACACTTACTAAGCAATTTTTGATA
TTGTTTGTTAAATATATATACTTCGGTATAATTACTTTAACAGTATATATATTTTAGTTA
AAAATGAGATTAAGTACCAACAGCGTTAAACATTCAATCAATCAATGACAGCTAATTTTA
GAGCGGCAAACACAGTAAATCGAACAGATGTTCAATTAAACATTACATACCCATAATTCA
GATAAATATTGACAGCATCACTACAGTCATAAAATAAAGCAGTCAGTCATGCACTATGGA
TATGGTTGCTGCCGTTCTACACAAAAAATCAATAAATACAAGATGACACTGCATGTACAC
GCAATCTATATATCTGGTTTATTGGTTTGCCTACTCAATAAAAGAAGGAGAAACCCTAAA
CCCTGTTAAACTTGATTATATTGTTAATAATACAACGCTATTTAATATTTATCAATATTA
AAACAGGGCAAAACACTTGTTACTTTTTGATTTTTAAATCCTTACCTATTAATATAATAT
TATATAATTTTAAATATTACAATCACTTAAACCCACAGAAAACATAAGCATAAAAATCCC
AACTACACAACAAGCAAAAATACAATCCATCTTAACTCACAAACATACAAAAGCCAATAC
TGCAGGTCTTTTCACATGTTATAAGTTGCCAGCGTGAGCACTACTTTAAATTTTATCTTG
GCAACAGAAATATTACTGAAATATTTACACTCTCAAACGAGCGAGATTCAAAACACACGA
AAGTACAAATATTTCAGTCAAGAGTGCAAATACTCCAATTATTTGTACTTTTGAAAAAAG
AGTTAAAACAAAAAACCTGTATATAGTAAAAAAATGACATACTTGTTTCCTATTACTTAT
ATATTACTCATTTCTTATAATATTGATTTAGAGACATTTATCTCTACGTTTGAATGTTTT
CTATAATGCCACTTCAACTCATTATAATGTATGGTGTTAAAGTCTGATTTTAAATTTTGG
TTTATAGAACTATTTTGCACAAAAAAAGTTTTGTGCAGATTTAAATATATTGGTTTAGTT
ATGGGACAACAATATAATATCTACAACAACATAATGATTAATTACCAAGGTTATGAGTGA
ATAAAAAGTTGACATGATAGATTTAGGCCCATAAGCAATTCTAAATTAGGTATTCATATA
TATATGACCTTCTACACAATTTTCGTTTATTAGCCGTAAACAATACAAACCTTGGAATTG
CTAAATACCAGCTTAACCTGTTTGACTAGAATCTATAAATAGGATTAACCAGCAATTCGA
AATTAAATAATATTTAAAACTAAACAATCTACATACACATGCCTAAATAGACTAAATACT
AGGTATAATGTTAGTTTATCATGCTAAATTTATATTATACAAAAGATAAAACATCGGATG
CTTGATTTGCTGATACGTTATTACTAACCGTTCTCAAATAACAAATTATTAATTACGCAA
TTTAACTGATAAGAAAATTAAAGTGCAGACAAAAGACAAACACTGTGGCTAGGTTTCTAC
TTCCCAAACCAGGTCATAGCACGAACCATTTTATTTGCATACACTTTACCAAACAGCAAC
AACAAATAATATAAAAGTCAAGAACACATAAGACGAAAATATTTTGCCCACAGCTAATTC
GATGTATTGTTAGAACACTTCACCGTAAGTGTCGTCCATTAATGGTCTAGTTTAAACCTA
TCGATGGTCCCTGAAAGCTCCACTGACTGATACCAAAAGTTACAGCACCTAATTCTAAAC
TCACAAGACTAAGAAATAAAAACACGTTTATAGCATTTGTATTTTATTGATCACATTTAT
TCGACAAGTTATTTTGCCCATACACGAATGGT

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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