- Region 'REG00000559'
Cis-regulatory Region
Name
Ci-R1CiGC09j11 -4292/3
Short name
n/a
Region ID
REG00000559
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Kusakabe team (2009-12-12)
Annotator
Delphine Dauga (2010-01-11)
Curator
Delphine Dauga (2010-02-26)
Conversion to aniseed format of DBTGR database entry from Kusakabe team.
Transcription start site is based on the start of the first exon of the JGI transcript model.
5,548,7985,553,093
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [5,548,798 / 5,553,093] on scaffold KhC2
Sequence from JGI V1.0
Show sequence
Length: 4,296
TGTGTTCCTAAATCAAAACAAATATATATAATGATGAAAACTGGAACAATTAAAAAACGT
TTGTTTTAAATGATTTATGCATTGAAAACTAAAGGTGCGAAAAATATCCAATTACAGAAT
TGTTGAAACATTGTTTTAAATTGCTTACTCAGTCAGCTACATTTTTTTAAAAAAAAATTC
CTAAATTTCACAAAACATTTTTCAGATAAATTGTTTGTTGAAATATATTAACACAATAAT
AAAAAAAACAGTAAGTTCATTATTGAACCTGTTACTGAATTTATAAGAAACAACTTTAGT
ATTTGTTACTAATTCTCAGTCGAACTTCTCTATTTTAAATTGCATTCTATACATTAAACC
TAATACATAGTTGGTCATTGCAGGAGCGTGTTGATATGGTAACCCACTGTAATATTTCTC
CAAACACAAATCAATAATATCAGCGCCATTATCGTTTTGCATTATTTTTTGCCAGTTGAC
AAAATTGAAAAATACATTAATTGTTTGGTTTGGATCCTTAAAGTATATAGTTTGGAGTTC
AGTTATTGTCTTGTCAACCTTTTTCAGGTCACACAGATTGTTTACTTCTGCATACGCAAG
TTCCACGACTTTCATTTTCAACGCAACGGGAAGTTTTGAAAATACAGCTTTAATAGTCGG
AGTAAATTCTTCGACTCTCAAACCAAACTTTAAATAATGAAGTAATATATTATTATCTGA
CACTTCAGCAGCCTTCGTGAGCAATCTTTCAAAAACTTCAACATCTTTTGCCTCATTAAC
CAACAAAGCAATTGAAACTTCAGATAGTTTTTTCAAGTCTTTATACTTGGCATCATGGTA
AGCAAGACTTGCTGTCAGCATTTGATTCCAGTTTGCGTTGATTTGAGAATGGTTCATCAA
ATCCTGCAGAACCTCTGGCTTTCTTGATGCAACTGCAGATTTTGCCATGTATAGCATCGC
CTGCTTCCAAACTTTATAGTTCTGGTTAGTTTGTGGGCTGAACGTGTTCTTAAGGTACTT
GGCAGCATCCATATGTTTCCCACTGTTGATCAGCTGCTGTATACGGGACATGATAACGTC
AAAACGCAGCTCTGGTTTAAACTGAGGATAAATAGTTGACAAAGCACTTGTGGCTTCTTG
AAAGTCTGTGGGGTTTAGTTTCTTTAAAAAAGAGCCCAAAATAACTCCTGGAATAAATGA
ATTAGATTCAATTACTGTTTGAACTTGTTGAACCACACTCTGAACATTCATATCCTTGTT
AAGAACCATCTTTGCCAGGTCATTCAGAGCCTCATCCAGGAAGATGATGCCAGGAGGGGT
TTTACCAAGCAAATCACATTTTTCAAATAGCAACACAGAACACTTCATTTTCAGCGAATC
TTGTGCATTTTGTTGTTGCAACAGTGAACTTGTAGCACTTTCTATCCATTCAAAATCATC
CGACCTGCAAAGTTGGTTGTAGTGAAACCAACTCATTACAGCGCTGTTGTCTTTAAGACT
CTCCAACACCGCTTGTGTCGTTTTCTTGAGTGAGTTCTTTTGACCTGCAAGATTCATATG
TCGACTAAGAAGCTGATTTGAACAGGAAAAATTGTATTTTTCGAGGAACCGCTTGGCCTT
TAAAGTTTCACCAGCATGAATATAGGAAAAATAGATCAACCACACAGCATTTTTTGTTGT
TATAGTTTTGGCAAGATGGTCCAGAAGTATTGTCTCCACTTCTTCGGTTAAGGATTGCGC
AATTGGCTTTGGCAGCACATCAATATCGAAATTAATGTTTTGTTCGTGTTGTCTTAAAAA
TGCATTTACATTTTCAACATTTCCGGTCAATACATGATGCCAGAACACTGCATTGATTAT
CATCTCGGGCAATTGCCTTCCCTCAAATGCAGCGATGATCTGGCTCACTTCATCTGTCGG
TAGATGATTCATTGCATCAAAAATAACTTGCAAAGTTAATTTTTCTGAAAGGTTGTGAAG
GTGTACTGTATGGAGAATTTTGTTGGTTAAACCTTTCCTAACTAGCAAGTACAGAAAACG
TGGATGACTTTTGTAAAACTTAGGAAACTTAAAATCAGGAGGATCACTGAAAAATGGACA
TAAAAAGTGAGACTCCCTTTGCAGATATTTTTTGGCTTCTTCTTCTGTAATAACAACTCC
ATTGCCTTCTTCCCCTAATCGTTGCAATATCGACACCATTTTGTTGATGGTTGGAGTAGT
TAAGAGATTCGCGTTGCACTTCCACATAAAGAATCTCTTCAAATCATCTTGGGTTATTAC
TTCATCATTGATAGCTTGGGACAATTTCCCCATTGCAACATCCAATTCTGTTGCTTCGTA
AAAATAATCTTGTAATATGTCATTACATAGTTTTTTACATCTGATAAATCTGCTTGATGG
GGCGTTTTTGTCTGAAACTTCGTTTGGTTTTAAGTGAATTCCATTTGCATTTAAAAACCC
CACTATCCTGGCATGAGCGCTTGTTCCTTTCACTTGTTTCAAGGCAGGCTGCAACAGGCT
TGGTACAAAGTCAATATTTCGTTCTTTCATTTGAGACATGAACTCTGCTGCATTCTCGTA
CTGTTCATTCTCCAGTAGTATACATAGATAGGTCATTTCCAGCTCAGATTCGCTCTCAGG
AATTCGTGATTTGAGAAACGCCAACTGTTTCCAAACCTCTTCTGTGTCATTGAAGCTAAA
TCGTGACAGATAACTCCGACAAAGCAACGCTGAATTTTCAACTGTGAAATCCTCATAGCA
GTTTTCCAACATTTGTCTCAAATATTTTACGTCGTCCTCTGGTGTTAGTTTTGCAGCATA
ACGGATGATATGATCCGGCTTAAACTGTTTGCATAAACCTATTACAGTTGGAATCATGTC
ACGTTGGTTTGTGTTGGCTAGTTCATTAATAATTTTAACACAGGGAGAACTGAATTCTGG
CAATTGTGAAATATATTTGTGAAGCACTTCTTCAAGCAAATGTGTGTTTCCACTTCTAAT
AAGGCCAAAGCAAAGCAATGTAACAATGGACCAGGTTGATTTTAAATTAGTTTTACTACT
ATCAATCGTAGTTTGAACCATGTTTATTGCTTGTGAAGGGTCACCTAGCATACAGTGTGC
ATATGCCAAATTACCGAAAATGGTATGGTGAATTACAAATGACTTTGACATCATGTACTT
AAAAACATGTTCTGCTTCCTTTAATTTGTTTGACATGCAGTATATTTTTAAGATTGTTTC
AAAAGTATTTGAGTTTGGTAAGACATTATTCGCAGCCATTTGTTTTAGAAATTGCTCTGG
GGAGAATTGATGATTGTTTTCAAGATAAACCCGAAGTAGCGCGTTGTACACCTCCACCCC
TTTTTCAGGAGCTGAATCAAAAAGTGATTGCGCCAGTTTTGTTTTATTCTGCGGATCACC
GATCAATGTGTCTCCGCATGCCGAAACTAGAAGGGCAAAGTGATCTGCTGTTGTTAATTT
CTGTTTCCTAAATGAGATCACATATTTGTTTAGTTGCTCTGTTTTTAAATATCCGTTCTG
AGTTTTGATCCTTTTCATGTCGAACTTTGCCCATAACCAAGCTTTGCAGTCTGGTCTTTT
AGCAGTTACCCAAAGTCTTGGACCTTGTTCTGTAGCTTCATTTTGTTGTACGTTTGTTAC
GTTAGCTGAGCCATAGCATCTTCTTAAGCAAGTCAACCCAGGCCTAATAATGTTTAAATT
AGCAGAAATGGACCGACAGCTCAACATGCTACTTGCTCTGGAAGTAGGAAATATGCCATA
AAATTATTACCGAAAAAGTTAAACCTGCGTTACTAAGACCATTGTTGCCCCACCCCGCAA
GGATAAATAAGTGACTTTTAAACAACTGCCAGTATACTACAAACTTATTGAAATGCGTGG
CTGTTCTATCCAAACAAAATCAACAAAAAACAACTTGTCCGAATTATATTTAATTCTACT
CACTATAGCATATTTGAATTCAAACAATTCGCAACACATGTGAATGACGAGTGTAATCAA
CCGTAACGAGAACTTTGCCTTATGAAGTCGGGGTAGAAAAAAATTAAGCGTGGCGTAAAC
TTATAAAGTTTTTATTTTTGCAAGATTAGGAACAATAACATCTTTGCTAACACTCATTAT
TATACGTTTTTTGTAGAATTTTATTACAATTTTTACAAAATATCTCCAATTACTGTGCTC
TTGAACAGAAACTGGTCGATACACTTTCTCATGAACAATAGGATAAACAGTCGTTAATAA
ACAATATATCATCGAATTGTGCTAAACATTGCAGCC
