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CIS-REGULATION

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  1. Region 'REG00000558'

Cis-regulatory Region

Name

Ci-Nut1 -1118/38

Short name

n/a

Region ID

REG00000558

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2009-12-12)

Annotator

Delphine Dauga (2010-01-11)

Curator

Clara Degos (2010-07-01)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.


Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-Nut1 -1119/94 by deletion

Regulated gene(s)

KH2012:KH.C14.4 (ADRB2; P2RY12; RGR)

Construct(s) made to test this region

CONS00000528: pCi-Nut -1118/38::EGFP

Show in situ data
Overview of functional TF binding sites in this region

1,413,8521,415,006

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,413,852 / 1,415,006] on scaffold KhC14

Sequence from JGI V1.0

Show sequence

Length: 1,156

NATAATACTATTACGCATTAAACTAAAACATAATCTGTTCTAGGAATCTTTTAACTCGGC
GAGCCTGTGTTTTCTTTTTAGACTATAATACCCTCCAATAACAGGGTAAGATGCATGCGA
AAAAAACGATTGATTTTGTGCATATAAAATATTTATAATAGTCTGGGGTTATGTGAGTGA
AATAGCTGGTTATATCTAACTGCAGCCGGAAATACGTGCTCTTTGCAGAAAGGAAAATCC
ATTTCTCGTGTATTGCAACATACGGTATAGTAGGTTTAGATGGGTCACCTTTACCACAAA
TAACATCCAAATATCCTGAGCATGTTTTAAACATTTAACAACGGTATATGTGGAAGTTGC
GAGAATACGGTTTGATAATTCATTAAATATGCTTTGTTTACTACAAAATGGGACGGGAAA
ATAAAATAAAAAGGTGTCCTATCTTCCCCCATCCTACTATATATATCATATTTTCTAATC
CTGTTTTAGCAATTAACAACGCTCGTTTAAAGTCGTGGGTATATGCGGTTACATAAATTT
AAAAATATTATTTGTTTACTTCAAAATAGAACGATAAAAGCGTGTATAAACATGTTGTAT
CATCTTACCCCATCCTGCTACAAATATAAACAATTTCATGATAAGAAAATGCACATGTTT
GTTATGCCGCGTGTTGTGTACAGTTCTGGTTAGGATTTCAGAACACACACACAGAAAATC
GGTCGTGCCTGCTGCTGCAACTAGTGCGACACCTCAATAATTATGAGACTGCCTCAGTGC
ATTCCTATCAACGTGTTTTGCGCTCGTATCACCCAAAAAGCGTGCCTCGTGCTGCCTACA
CGGTGTGGCTACATAAAAACGTCGCGTGTTTTACTGTTCCAGTTCGTTTTTGTATTCGTG
GAAATAGGTTCGCATTTTTTATTAAGAAAGAGTTTGGTTTTCGAGGTCACTGAATTGCAA
TTAGAAGGCATTTAATAGTAGCACTAGGACACTCTATTCACTGCGTTGTCTAAATCCATG
CGAAACAACAAAATAAGTCGCAAGACATGCTGTGCGTGTATTGTTTTTTTGAAACCCCGT
CGCTTTGTGAAAATCTGGTTGATTATTTTTTCGTACCAGTTTTACAGTTTAAATACGACT
GTGCTTCAGTTTTTGT

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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