Aniseed - Cis-regulation

Region 'REG00000556'

Cis-regulatory Region

Name

Thioredoxin -1612/959

Short name

n/a

Region ID

REG00000556

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2009-12-12)

Annotator

Delphine Dauga (2010-01-20)

Curator

Delphine Dauga (2010-03-01)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.

Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Thioredoxin -1612/959 REG00000556 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.C10.549 (ITIH3; ITIH4; ITIH5)

Construct(s) made to test this region

CONS00000526: pThioredoxin -1612/959::EGFP

Show in situ data

Overview of functional TF binding sites in this region

1,691,7731,694,344

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [1,691,773 / 1,694,344] on scaffold KhC10

Sequence from JGI V1.0

Show sequence

Length: 2,572

TCAAAACGTGCGAGTTCCCCGCTCTCTTGTTTAGCGAGTGTTTGAACAAAACCGAATGTA
CTTCGTCCAATCACCTGATAAAAACAAAATATTTGAAATTTCGAATTTAATGAATATTTC
ATATTAATCTGCAGCAACAGTCTTTATAACACGGGTTCTTTGTTTCATTTACACCTGGTG
CATGATTTACGAGTTACCATATATATTATATATATATATGTTACTTTGTGGGCAAATATT
TTGGGGGGTCTTGTTATTCATTTTAGTTGATGGCTTTTAAATCAGACAAGAGACCACTGG
TTTGGAGCTTTTGTTAGGTGTCTTGGCCCTAGAACACATACATCCAGAATGGTAGCAAAA
TCGAGCCTCAAAGAAGAATCTTCTTGAATAGAGCCAGGTGCGCTAACCACCGTGAACACC
CATGTTATAACGACTGTCGTTTTCGGGCCACATGAGAACACAGTAAGTTACATTCAATTT
GAATAAGATACCACAGTTTTATCTCATGCAACCCAAACTGTGATTTTGATCAGAAAACAA
AAGTGTAAAAGTCAATACCTTGATGCTGCATTTAGAGTTTGCAGTTACATTTATCATCCA
TTCACCATGTGTTTCAGTAACATTAATTTTTCCCTCAAATAGATTGTCTATCGTAACAGG
ATCCTTGAAAAGTAGAATTTAATACAACTTTAACAATTTTTTTTTTAATTTTTATATACT
TTTATATTCATTTATTATGACTATATACAAATATTTTATGTTAAAAAATATTTGTTTTCA
AATTATGTTATGGCATGGTATGTACCGTCAATGGTAACACTCTGCCTTCATATGAAACTG
TAAACCTCTGGCAATCTCCTGTGTTTTGGAAGAAGACCGTTTTAACTGAAGCATCGATGT
TGACACGGAATGTATGACTGCCACCTGTTGTGAAAATGTTATAAGATATGTGAATGAACA
TTGCAGTATAGAAAGAAAATATATAACACAGGTGTTCTGTTTCATACATTATGTCCTTGC
TTACTAGTTACCACATATGCTTTGTGCGTGAATATTTATTTATATATATTTTTTTTCTAA
ATGTATATTTGTTAGTTAAGATAACCCATAAGGGACCACGGAGTTGAAGCAGTTGCTGTT
AAGTGTCTTGCCAAAAAATATGTATGCTGGTTGCTGACATTCAGTCAAATAAACATTAAA
ACAGCCAAAGCTATTTTTGCAACAGTTTTATAATTTAACTTACTTGTTACAGTTTTTATA
GCTATATCCACAATTCCTTGTCTCACTGTTCGATCAATAACTTGGGTGGCGGAGAAAATA
TCACTTTTTCTGATGACTAGTAAAGCGCCGCCTGTGCTGGTTGCCATGTATTGGTACAAC
TCCAAACCTTTCTTGAATGAAGCTGTGTTGCATCTTCTGTGCGTGAGGCTTCCTCTGTGG
AGTGGAATATTTATGTAGTGTTCAAAACTTAATGGTGTCGTTTAGTAGATTTTGATGAAA
ATCTTCATAAAAAAGACATTGCCAGCTTATAAGTACTTTTCTATACACATGTAAAGTCAT
CTAGCAAGGCACACACACCAGAAAAAAACATAATTATAAACATAAATCAAACTTACGGTC
CACCAGTTCTCATGAATCGGCACATTGTTGTAGAGATAGTATTTGTAAGAAGAAAAGTGA
TTTTGATGTTCCTCTGTCTGGCTTGTGCAACAACCACATCCTAACAGGTAAAACAAATTA
TAAAAATTAGTCTTTTTATTTTACACAATTAAACATAGATAGCATGCAGTATGTGCATTA
TTGAATACTATGCAAATAATAAGTAGGATAGTTAAGTTACAAAAAGTTTTAGTTTAGAAA
TTAAAAAATCGGTAATGATTTCTGCTAAACAGCCAATATCGAGTATGAAGTGTATGATTC
AGTAGAATCACAACACTAGTTAAAAATCATTCAATACGTTAGGGGTATAATTTCGGACAC
TAGTGAAGAATTTTCCGGTACATAGCAGAATAAGCTGGTGGAAAGTGTTAAGGGTTGGTG
GTTAGAGGTTGATGGTTAGGGGGTTAGTGGTTATAGAGGTTAGTAGTAAGGGTTTAGGCC
TTAGGGGACAACCCCTATTATGATGCAAATAATCAACCTGTAAATTGCTTTTATGTTGTA
ATCAATTGCCAGGTCAAACAATTGCTATTGTGATGCAATGAATCCACGTGTGAATCCCTA
CTATGTCATAAAAAAAACATGCTGTTTGGCTGAGGAAAACATATATACAGCAGTGTTACT
TCTGGGACATATTGAGGTTCAAGACGTGTTTACTTTACAACGCGTCTGCTTAGGTTGATT
CATTCTTGCATATTACTCAGCGTGCTTTTAATAATGTATCGGTTCAGGAATCCGGCCTGC
CAATTATTTTATTTTTCCTTACAAGGCCCACCGACTGGAGAAGTTGCCCGCCCCTGGTTT
AGGAGTTAGTAGTTAGGAAATAAGGTGGGGGGAGTTTCGGTTGTGGAGGATTCTTTACTA
TTGCACAAAATGCTTAACACTCGACAATTAAAACGACACTTGCCTGCAATTC

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5