- Region 'REG00000554'
Cis-regulatory Region
Name
ETR -2263/408
Short name
n/a
Region ID
REG00000554
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Kusakabe team (2009-12-12)
Annotator
Delphine Dauga (2010-01-11)
Curator
Delphine Dauga (2010-02-28)
Conversion to aniseed format of DBTGR database entry from Kusakabe team.
Transcription start site is based on the start of the first exon of the JGI transcript model.
156,838159,509
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [156,838 / 159,509] on scaffold KhC6
Suquence from JGI V1.0
Show sequence
Length: 2,672
TCTGGATAAAGCAATACATACGAGTGAATACAATACAGAGAATCTGCGCGGAATAGCCAG
GCAGATTTGACGCACGTCGTTTATCCCCGCTTTGGCGGGCCATTCCACAAGTCAGAACAT
AATGGCAAAGTATAGGAAGTGGTATAACTAACAGGAAACTGGCGCTTTGTGGTGTGGGCG
CATCCCAATGCGTTAGACTAATACTAGCGAACGTTTATAGATAACGCAGTGTTAATTCCA
CAAAAAAAGAAAATTAAATCTACTATTAACGCACTTTAAAATTAAACTGAATATACACGA
CTAATATGCTTCTATAAAGTCACTTACATATAGAACAAGCAATTCAAATATAATATACTC
GTCGACTTTGAACTAAAATGCACTTAGAAAATCACAGCTTATTAAAAACACGACTCCAAA
TCTGCAAGAGAAAATTTGAGAGTAAAAAAAATGGTTATATTATTGTGACACTATGCTAGT
ACTATACTGATAATATAACACACAATACAAAAATCACTCTCTATTCTGTGGTATAGTATC
TGTAGTTAACAAGAAATGACTGGGGAAACAGAAAGGGGACAGAATATAAATCTACCAAAG
TGAGAGAATGCATGATCTCCAACCAAGAAAAAAGAGAAAAAGGCAACTGGGGTCAAAGAG
AGACTTTGTTTTTGCTCAATGACACAAGCTGGTATACCACACAGCTGTCCTTTGTCTATT
TCCCAGTTCTCTCTTTGTTTAATTAACTGCAATTAAAAGATAATTATACTGTGTGGTCTC
AGCAGAGAGGAACAACCCATAAATTGATGTCACACTATTTGATAAAAACTCTGCTGTATA
TATTTGTGTGCGTTAACTTAAATGTCATGTAATTTATTAACCATTTAAAGAAATAAAAAT
TAATTGTTTAAATTCAAAATAAATAGCACAGAAATCGAGTACTATACCTTGAAGAATTGC
ATTGCTTTAAATATCCCAGTTCACTGTGGCAGCCTGTTTTTAAAGCTTTGTCAAATACAT
TCGCTGCTGTAATACACATGTACAACACCTATAAAAACAAGTTTTATAAAAAGCATAAGC
ATATCAAAATTATAGTTATAACTGAAAATGGGACTTAAAATCACCTAATTTAATATAATT
GCAAAATTTGTACTAACATTTATTAGTAAGTAACCTATATATTGTCAATATAGTAGCTAG
AAGGCATTATCAGTATCATGATTATAAACATTATCTGATTATTAATACCAATACTATACC
AGACTTGCTGGTTCTGCCTATATACACTATATGCCATGGTTTTTGCTTTTAAAACCATAT
AGTGCCAATGATTACAGTTGCATGCTTTACATAACCAGTAACCACTACGGTTACATAACC
ACTATATGGTTTCATAACATAAGATTTTCTCCTTTAACCAACAAAAACAGTTTCTTTAAG
GAGCTTCTCCAGACAAATCTAGGTTAAAATCTTATACAGTTACATAATGATTATAAAATA
TATTAAAATGCTTTGAGTAAATGAAGCACACGAGAAAACTGTACACCGTATACTGCGTCT
AGCTATAACATACAATTACTAACCACAAACGGCTGCTAAATAGCTTCATAGGAAACGGGA
TCACGTGACGGTACGCATGATTTACGATTACGTAGATAGAAATACAGCAATTTGAATTTA
ACCATTTTTCAAGAAATATGCAAATGTATTGGAATATTTTTTACATTTATGTGCGAATAT
AAGCAGCATATGCTTTCACTTCCTCGTTGCACAACACCAGTTATTCAAATAATCGATATA
TCGTGTTTGGAACAAGCCAGCATCTGGTAAACGTCGATATTTTTCGGCAGCCGTCGCCTG
ATAACTTATTGTACCCGATAGTTGTTTGTTTTGTTGTTTAAAATGTGACGCGTTTAATTG
AAGAATTTCTTAAAGTGTGCATGGCGCGTGTCTTTTGTTTAGTAGTGTCTCGTCCGTAGT
ACATACACAACCATACGTGCTTTTGAACGCAAGCTTCCCTACGGGTATAAAAACTTTTAG
TTTAATTGCAATATCCTGTTGCTTGTATCACTGTGCAAGTAAAGAGAGGGATTAATGCAG
CAGTCGTGTTTATATAAGGAATATATGCTCGAGCAATCTCTGAATACGCCCGGGGTGCAT
CTTTTGTGTACCAACGATAAACTGAAAGGCAAATAAGATGCTAAAAGGAAAAGGATATTA
GCAGCTTTAAATCTAGTTTATTACAGCGAAAATGGATCTACATAAAAAAAAACGTTTTAC
TGAGATAAACTGAACGTGGAAATGAACTCTCTTTTTACGAAACAGCTGTACACAAAAAAA
TAGGCTACACGTAAAATCATGCAGTTTGATACCTATTTTTTACATTACTTTTTATGGTAA
TGAAAAAGAAACCACTATCATTACACAACTGGCCTAAATGCAAAACATTGAGTTTTCGGA
AATTTTGCCGAAAGTAAAATTTCCGAAATTTTACTTTCGGCAAAATTTTTTATTTTACTG
AAATTTTACTGTTATGTTCTTTGCGCTTCAATAGGTACGGTAAAAGTTGAATATAATGTA
TTTAAATGCACAATGTGTGACTTCAATATTCGAGGTAGGCTTCTTTTTTAAAACTTCATT
CCTTTTTGGTTTTCAATTAACTCCGTGGTCGA
