- Region 'REG00000551'
Cis-regulatory Region
Name
Ci-R1CiGC29d23 -4970/-1
Short name
n/a
Region ID
REG00000551
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Kusakabe team (2009-12-12)
Annotator
Delphine Dauga (2010-01-14)
Curator
Delphine Dauga (2010-02-26)
Conversion to aniseed format of DBTGR database entry from Kusakabe team.
Transcription start site is based on the start of the first exon of the JGI transcript model.
Note that there is a problem when we blasted the sequence against the JGI V1.0 whole genome assembly (you cannot visualize this sequence on the genome browser).
1,158,6221,163,591
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,158,622 / 1,163,591] on scaffold KhC2
BASE COUNT 1536a 923c 936g 1575t others
Show sequence
Length: 4,970
AACCCATTTGATAAGATACGGCAATTTACCATATATGTAACTTTCTGAGTCATTGTTTTT
GTTGTGTTATTTTTGTGTGTGTTTGAGAAATAGATTAAGTGAAACCCACCACCAAGTTTT
GGTTTCACCTGTTTTCAGGTCGGAATTTGGAGTCAAACGGGGGAGTTTGGGAGTTGATGA
ACGAGCTGCATCAGGTGGCTTTCCCACGTGACCTTCCCCTTCCGTGATTGGTTGGTTCTC
AGGTATGTGGGGGAGTGTAAATGTAGTTGATGATTCCACCACCTTAAATAATAAAACTTG
CAATTAGGAAACGTGCCCATAACTTTGAATAAATAAATTAAATGAACTTATTTACTCTCA
CGTGGCGGGCACGTTATTTGGAATGTAGGACTGAAAGTCTGGACAACTCATTAGTGACCG
CTGAGTTGAAGCAATTGGCATGCGCTGTATTGCCCAAGGACAGACATACCAACAATAGTA
GCGGCAACGAGCCTTCACTTATTGACCTCTTTATGTCACATACAGGTCTACGCTAACAAT
AATGTAACGGCACAGGCGGCGGATTTAACTTCAATCATTCTCTGTTGTGACAAATGAAGC
CCCTTCATCTACATACCAACAAATATAAATTTATAGTACGGTGGGGGAGATGGGACATCT
TTGGAACCTAATATCCAAATATCCTGATCGTGTTTAAAAAAAATAAACAACGGTATATGA
GGATACGGTTTTACAATTCTTTGAATTTCCTTGTTTACTACCAAATGGGACAAAATTGAA
ATGAAAAGGTGTCCCATCTTCCCCCACCCTACTATACTACCATACATTACAGCATGCGTG
TTTTAGAATAGGTCACTTGGATTTTTACCTTGACTTTTTGCTGCGAGGGTGTTGCCCTCT
GTCTCGTGTTAGCGGCATATTCCCACCAGGTTCGCATTGCTTTCTTCCGTTGATCAAGGA
AGTTAATGCTGTTACTCCCTTCAACAACCACCCCAGCCCCAGTCAATAAACCGCGCTCAA
TTCCAGCGGTCTGTCTGTGACATGCAACAAAATCAATATTTTGTTGATTAACGATATTAT
ATCGGTAACGAGAAACCAAAATCGGGCTTGGGGTAAATTAATTGTTAAAATAATAATGAA
TTAAATATATGCACCTGCGATTTTTTAATAAAAACACCATAGCCATAATCCGAAATAATT
ACAACGAGTTTTACATAATACACAGCGCCGCAAAATATGAATTATTTTAAAAACAACGCT
TTCGCTTTAATGATTAGTATTCTTAATAACCTGTTTTCATAAAGCAATCCATCGATCTCT
CGCTCACCAATCCCAATATATTTAAGCAACATGCGCATATCGCGTCTGCGCAAGTGCATT
GATACGTCACAAAGGAATTCGTCAAGCTCCATCGCTTCTGCAAGAAAAGTTTGCGGTTGG
TGCTAATACTCATATGGCACGCAGGGACCAACGATAATATAGTGATGCGAGGTAAGATAG
GACCGAATCCCTATTAGCACCGAATCTCTAAATATCCTGATGGTGTTTTAAACAATTAAC
AACTGTCTATGTTGTGAGGATACGGTTTTATAATTCGTTTAATTTTTTCTTGTTTACTAC
CATACGTGACGAGGGGTAAAATAAAAAGACATATGTCCCATCTTTCCCCACCCTAATATA
TATTCACTGAAGGAATAAAGCATAGACCAGAACCGAAAAAAACGCAATCATAATTCTTAC
TCAATTTATAACCGTAAACAAAACAGCGATTTCATATTCAGTTCTTACCATTGGTGAGCA
CGTAACTTGGTTCCATCGTCGATAAAGGACGTCTAACTTCGCGAATATTAACTGGTGGTT
CTGCAAGGTTTGATCAAACTTAAACATTTACACTACACTACATAAGCTGTGTGTGGATTG
CGGTGAAGACTCCATGATGAAAAAAACAGTTACAACATCTACCTTTTACTCAGTTAAAAT
ACTAGGGAAGCAATTTGACCTTTGCGAACCTACATAGCCCTAGGTTTCCAGGCAGATGTA
CATAGGGCCATCTTGAACGGGTAACCTTTCGAAATTGTAGCAAAATAGTTTCGAGTTTCC
CGAATATGAAATCTGAGCCAGTTAAATAGTCGGCGTACAAACGAGCGAAAGGGGGCTTTT
GTCCTTTTGCTAACTTGATCCGCTTTTGAATACGCGTTACATTCATCGTGAAGCTGTGGG
ATCTGGAATCATAGCTGGACCACTGCACCAGCGTTGTTTTGGTTGCCCCCGAGGAAGCGT
GTTCGTATATTGCGTACAATGAAGCTTCTGTTTTCACTTCGATATTCGTATTTACACAAA
ATAAGCGCTGGCAATACGCTTCGCTTTCACTGTCAACTATCAAACATATTTTGAGAGAGT
TAATAACCTTTAAAGGACAAAGCACCGGGGTTGCCTAATTTTAGTAGAAAAAGGCAAGAC
GTTAAACAATCATGAGTTTACGCATATGTTCGCGTACATCAATGGCGGCAGTGCAAATGA
AACAATAAACACACAGAAAATAAAATCGGCATAAATTCCCCCGAGAAGCGGTTTTATAAA
TTAGAGTTGTTAAAACACGTAAACAAGATTAGGCTTAAAGCTTTAAAACAGCAATTCACA
AGGGAATTTTTCTTTGGGTTTGCGTGCATTTACTTATTAACTTAAAGTTGCTTCGTAGAT
ATTACGAAATACCCGATGACCTGAACTAGCCGCCGATTCAATATTATAACGATCCGATTT
TTTGTAATTTGACGTCAATTATATAAATTGTTTTATTGATATGACAGATGTGTTTTTATT
AGGTGATATTCAATGTTTGAATTTACTATATTTAAGTTATTCCCGCCCCTAACGACATAC
TTGGAATCCAATTGGCTTATCACGTATATTTACGCATACAACACCACAGGAGCATAATTA
ATTCATGCCAACCTGATTTGCGGGGCTTAGATAAACAAGAGTGTCATCAAGACTGGTTTC
ATGTGATTCTACTGACAGCCGACTGTTTGTACAAACGGGCCGTTGAAGCTTCTGGAAAAG
CGGACTGGGTCTAGAATATTATTTACTCCATCAACAAATTCTATGTGTGCACTCCTGGCT
CTCGGGGGTCTTAATCAATAAATCCTCTTGCCGCTTTATTACTCCTAGTCAGTTCTAACA
AATCCACTCTATTTAAATTAAGTCAGCGATTGCTCACTTCCGTCCTGTGACGTCATTTTT
TCTCGTAATCGGTGACGTCACGGGTGATCTGCGGGAAAACATCCAGTAGAAGTTTCTTTA
CTCCGGACCACACGTATCCGGACCCCATACACCGAATAGTATTTTATTAACGTCATATCC
CGAAGATGTTAATAACATGGAATCCGGTTTTAAATTGGTTTTGTTACAGTAGAGTGACTG
ACAGTTGTATAGATTGCAAGCAGGTGCGTTAGATGCGCGTATTCATAACCAACCTACCAC
ACAACGTCTTCAAAACCGTTGATTTGAATGTAAAAGCGAGTTGGACAGTTTGGAAACGAA
CAAAACAATTTGTCATTTAAAGAATTTTATTGGAAATTTATTACAGGAAGATTTTTTTCA
TTTTATAACACTACGTCTTAAAGTTATGACAATGAAAGGAAATTTTTTGATGAGATAATC
GTCAAAAATCTAGCTGATTACGGTTGTTCGACATAGCTTATCTTCGTCGTTGGAACCCTT
AATCGGCGTGTTTAAAGCGCTAATGAATAATTAACGTCTTACCATCCTAAACATTGTGAG
GCACGCCCGACCAGCGACTTGACACACTTGTGTAAAACCGCGAGAGTGCGTTTGCTTCCT
GCAAAGGTGTTACAATGAATTTTTCATTGATTTTCCTTAAATCCGAAACAGGGTTGACAT
TGCAAGTTTAATGCATTAAATGAAGTCAATATACATGGAGTGCGATTTTTTAGTTTTTGT
CCATTTAATATGCAATAGTGTATACTGTATATAGTAGGGTGGGGGAAGATGGGACACCTT
CTCATTATATTGTCTCGTCCTATTTATTAGTAAACAAAGAACATTCAAAAAATTATAAAA
CCACACCCTGACGACTGTCATAGACTGCTGTTAATTGTTTAAAACACGATCAGATATTTG
GATATTATGTGCTAAAGGTGTCCTACAGTACGAAATGTTGGTGTATATGTAATTGATATT
ATAACCCTGGTATATGGTAGTTGGATAAAACAGACATTTCGTTGAAATTAAGGTCGCAGG
ACTATACGTTACGAACTATAAGCAATTCATTACCGTTTCCTAAAATTCCTTATCTTTTTT
ATTTTTTTCCCAAATCGCCGAACGTCTGTGATAGATTGATTTTGGCGTTTTATTCGAGGT
ATAAAAGCAAGCGTTTGGAGGCTCGACTGGCACATAGTCCATTTGACGATGCAGTATAGA
ACGGGCGCAAAGAATGTAACTGCGAGTATAACAGAAAACGAAAGTTATGAAATATTTTTT
ATTATTTTTTTTATTTTGCGTAGGTTCTTGTTATCAAAAGTTCGGAAAATATTTCGCTTT
TTGAAAGATAACCGTGTGTGGTTTAACATGTTATAGTTAAATATAATATATAGTAGGGTG
CGGGAAGATGGGACCCATTTTTATTCTATTTTCTCGTCCTATTTGGTAGTAAACGAAGAA
CATTGAAAGAAATATAAAACCGTATATTAACGACTTTGACCGTCGTTACTTGTTTAAAAC
TCGATCAGGATATATTTGAATATTCTGTGCTATAAAAGTGTTCCATCTTCCCCCACAGTA
CTATATATGCTACTTAAATAAAATAGTTTTTAGTGGGAAGCGAAACTTTCATTAGTAAAA
ATTCTGGACAAACATTCTTGTTTTGTATTATTCACATAATAATTTTGTGAAATAATACGT
CGTTATTTTTTTAGGATTTCTATATAAACTAAGAGTTTAAAAACCTAAGT
