- Region 'REG00000549'
Cis-regulatory Region
Name
Tubby-like -1190/-6
Short name
n/a
Region ID
REG00000549
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Kusakabe team (2009-12-12)
Annotator
Delphine Dauga (2010-01-11)
Curator
Delphine Dauga (2010-03-01)
Conversion to aniseed format of DBTGR database entry from Kusakabe team.
Transcription start site is based on the start of the first exon of the JGI transcript model.
4,741,8834,743,066
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,741,883 / 4,743,066] on scaffold KhC2
Sequence from JGI V1.0
Show sequence
Length: 1,184
GATTAGTCGTAACCAAACAGCAGAGAAAGTGAATAGGACAGCGAAATATCCAAAATTTTA
CAGTTTCACTTAACCTACAAGCTACCGCACAAACTGGCCTATGAAAAAAACATTTTACTT
TATTGGTTAGTGGTAGAAAAGGCCTTTTTCATGGCCTAAATTGCTGGATCTATTAGACAT
AGTACTGTATAGGAGTATAGGATTTAACGCACAAAACTGTGCCCCTTTAATTTAGTTTGA
CAGCCTACACAGGTTACCAGCCTTTATTATTATTCAAATACACTATATCTATATTATCTG
TTATACAATCATTTGTGGTACGTGCCCTGTGGCAACAAATGCGACTACTCAGACACCGAT
ACGGTACATAGTACCTTAAAGTAATAAAACACACCCAAAAACGAACTACGTTACTTTCAT
AGCGCAAAGCACTTACCAGTCTACTAGTCTAAATAATTTAAAGCCCAGCTGGAATTCGTT
TTGCGGCGAGGTCAAGGGTCACCGTCAGCTTTCAGTCATTGGTTGTCAGTCACGAGTACT
CTACGTCACAATGAACATTGTTTTCGGCGTTGCCATAACAATGATTGGGGCAAAAGTTGA
TTACGTAGTGATTTCCGAGTAAACAAGAAAACTAATCAATCAACTTAACAGATTATCTTG
CTAGATGTTTCAAATACCGGTAAAATATGAATTAAAAGCAATCAATCACTTGATCATGTT
TTGTTTACGGTTCGGAAGAGAAATATTGGCCACTCCGAAATCATACTCTTACATTTACAC
TCGTAGATTGAAAAGCACTGGGACTACCTGTGTTGCATATAGATTTCACACACCTTATGA
TTGCGCTCAGGTCCTCAAATATCTTTGTTTTAAATTTTTTCGTGGGTGCTTTGTTATTTT
ATGTGGTGCTCTTTTTCCAAACAAATGACTATCCCTTTCAAGTTCATTTAGGTGTTATAA
TATATAGTTTTGTTTTATGTGTATAAAACGCAGGTAAAAATTGTTTCGTTCACTTGGTAT
TACATCTTTCTATCTATGTATTGCGACTAATTTTATTTAAGGGAAAACCCCTACAGCACG
TTTAATGTTTGTTTGTTTTTATTGTTCTTGAGCTACGAAATTCCCGTTTGTACAGCAAAA
TACTGCAACAAATTCATCATGTTCAATAGACATAACTGTGCACT
