- Region 'REG00000520'
Cis-regulatory Region
Name
Ci-cdx -4000/104
Short name
n/a
Region ID
REG00000520
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Kusakabe team (2009-12-11)
Annotator
Delphine Dauga (2010-01-11)
Curator
Delphine Dauga (2010-05-20)
Conversion to aniseed format of DBTGR database entry from Kusakabe team.
Transcription start site is based on the start of the first exon of the JGI transcript model.
3,382,3203,386,424
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [3,382,320 / 3,386,424] on scaffold KhC14
Sequence from JGI V1.0
Show sequence
Length: 4,105
TTGTGCGTTTCTCATCAATGGTTGCAGTCTTCTTGCGAACAAAACGCTCAAGAATCACAA
AAGTTTCCTTGGCAAAAGTTTCAAATGGCTGATGAACCTAATACGAATCTAAATTAAATT
ATAATCTTAAGTGCCTGAGATTTATGTTATAACTTCTGTAGTTGCGCGATTTTAGTAATT
GCTTTGTAACTGATTTACGAAATCTTTATTTGTAACATAACTCCGGAAAGGCATGTTACT
CCTTAATTTACAACCTGCTGCTTTTAATATAACTTAATGACGGCCAGGCTTTGTGTACCG
ACCAATAAAACTGCTCTGTACCATGCGAGGTTCAATTTACACTGAGTAACCTTGGACTAT
ACATGCGACTGGCTTGTACAGCTCGCTTTTTTCTTTTTTTCGCCTGCCTGTCCTTATACT
AGCTCTGCCGGTTTGTAAAATGGCGCAGTGACCGAACGACTGACCGAGACTGTACTGTAC
GGTGATATAACGATCGCCTTCTCACAGCACACTGCCCAATAAATAACCTCTTCATGACCC
AATAGACGACATTTTCGTACAGGTCCTCGGTCGTGACGAGAATTGTACGAAACACCTACC
CCCCAATCTCGCAGCCGTTACCTCAAAGTCTACCTTGCCGCGCGGGTGCACCGCAAAGGA
CACGCGCTGACCGAATAATTATGATTATTACGTAGCAGTTTCGTAACAAACGAGGGGCCC
AAAGTTCGCAAGGCCGAAACAAAGATTGAGCGATTTTCGATTCGAAATTTCCAAACACTT
TCTTTTGTTTTCAAAAACGTTTGAAATCGTTCGCCCGCCATTGCCGACTGTTTGATTGGC
GCTCGCCAAATAATGCTCTTTATTTGTTGACACTGTTGTATCTCTGATGTTGCGATTACT
GTTTCAGGACTGTAATCTAACAGTCTCTATTTCGCTTACAACTGTTAAGTATATGTAGAG
TACGAAATGTTACAAAGAAGTTCCGCTAAATAGGCATGATACGGACTTACAGTAAACTTG
AGTCATACATTTTCTCAATAGCGATCAAAAATGGGAGAAAATCAAAAAAACTAGAAAACG
ACTTTGAAAATTACACTCTGTTTAACTTTTTTAGCAAGCTATGGTAGTTTGAGGGAATGT
GGGACACCTTTGATTCATTTTTCTCGTCCCATTTACCAGTAAACAAGCAAGGTATAAAGA
ATTATATAACCGTATCCTCGGCTCTCATAGACCGTTGTTAAAACCTTGTCCCTTTTAAAG
ACATAACTTACCAAATTCAATAAATAATATTTAAATTAAAAAAATATGAACATATTTTAT
CAGCATATTTAATTACATTAACTACTACCCCCCAAAATCTTAACATTACCAAACCATCAC
AACACTCTGTACAAATAATTTCCATTCGAATCGCGTGTAGAGCGTTCCACGGCCAGATCA
AGGCAAAAACGATACTGTTTGGTCAATAGAGTATTGTTTGCGTTGTTTTATCCAGTCTGG
CGGTATACGGACCAGGCAAGCATTCAATGTAGCGATATATGTTTCACGCGTTAAAACTGC
TGCCGAATGGTATTTGATTTTTGCTCCTATAAATTACACTTGATGTATAGTAGGGTGGGG
GGAAGTCGGGTTATTTTTTGCACATACTATCTTGATATTCTGATCGTGTTTTACACAACT
AACAACGGTCTATGGAAGTCGCGAAAATACGGTTTTATAACTCTTTGAATGTTTCACCAT
ACATACTACTTTTTTATACACAATATATGTAAATACGTGGGTAAATTTACCAGCTGTAAA
CCTTAAATTCTGTTAACTTGCTACTGATACCTATTCTCGCACAAAGCAATGAAAAAAATG
AAGTTTCGTTTTATAACACCAAGTTAAAACTGATTTATTACTCGCTTGTCTAAAAATCTC
TACATTTCTATTTAAAACTGTGTAGTCCGGTTAACCTTATAACTGAAATATATAGTAGGC
TGCGATAGAATGGGCCATGTTTTTATAAACCTTTATCGTCCTGTTTGAAAGTAAACAAAG
AATAAATACAAAATTATATCCTGTAACCTCATGGCTCTAAAACAGCGTCGTTAATTGTTG
AAAACACGATTAGCAAATATGGAATATTATACGTGCTAACATAATCTATCTTACCTCACT
GTACTATATATATTTAAGCATATATATACTATATATGTTTTACAAAATCCTACACTCTTT
AAAAATTTCGCGTCGCCTACAGAAGTAACTGTTACGTCACAATGCCCTTACATGCGTAAC
AATACTCTGCAAACGATCGCTTACTCGACTTCAAAGTACTTTCTCTGTCTTTCGCTTTTC
GCGCCAAACATCGAATTGTCATGTTATGAATTCTCAACCGACACCTATCCTACGTCATAC
TGTGACGTCATGGCCAATGTGACGTCATCACGCCGAATCAGAGCTGCCATAATGTGAAAG
GAAGCTGGGAAGTGCAAATCTAGCTTTCGATATAAAACTAAGTAGACTAGATTGATAGCA
AGACCGTATGCAATGAATACGCTCCTATTACCACGCCTGCTTATATTCGATTACGTAGGA
AAAAATCCGCCATTGTTTCATTTGTTTTACCTTTAAGTTTTCGGCCGCGTTTGATTTTCA
CTCCCGTGGTTTTGCATGAATAGAATATAGGAAACTTATATTGATCATTTTTAGTTCGAC
AACGCGCAGGAAGGTACGCTTGCTGGACGCGACGCGGTGTGTGTGACGTAGTTGACCGCA
TTGTTACGTCATAATAACGCAACGCGTGCGGGCGCGGTGCTTCTTGAAGAAACTTCATTT
CCATTGTCTTACTATTGTTACATCACTAGGGTCTACACCGGTGGGAAAATGGCGGACGAA
GCGGTTCCGATCGCAGTGTGACGTCACAGGAGCAGATATGACGTCACGGGAGCGAATGTG
CGGAAGCGGCGAAGGGTCGACCGTGAGAAACGAACCCAAACTTCCCGAACCGATGTTGTA
TTACAATACATTTCCTCTTATACCACACAGGTAACTTACAAAGCTCAGCTGTCATATGAT
CGGGTCTCCAGCTTTTAATGAAATAAATGAAAAACAGACGACAAGCTGTATGTACAGTCC
TTACTGCGTTTATTTTGTTCCCGTTTTAAGGTTTTATTTTTTTGGTGAAATGTTTTTTTT
TGGTTAAAAAAATGAAGGATTGATTAAATTTTTCCCTCGAATAACGTTATTGTTCAATTT
TTTCCCTCGAATAACGTTGATTGTTCAAACGCAGCGCAAATTCTATTGATTTGTTTTAAA
CTTGCGTGGTGTATTTGTATTTACCTCTTTATTTGGGTTTCGCAAATCTGATTTAGACAG
TAAAATCATTGCAGACGAACTAAAATCAAACGTTTTTCTGAAACGCTCTCTTTAAAAGTC
AAGCTTACGGGCATACCTAATCTGTTTGTTCATTAAACATAACGTCGCTTTCGCGTTTTT
AGATAAAAGCACGTCGAGGCAATTACACCGCATGCTAACAAATTCTAGACGTGTTTATTA
CGTCATAATAAACATTATTCGGCACGAGCCGCTCGTTTCAGGTTGAGCTTTACCGTAAAT
AACTTTCACTTTGATGACGTCAACTTTGATGACGTATGCTTTGATGACGTAACGTTTAAC
GGAGACTATAGAAACTGAGTTCTATTTCTGTTTTTCTATAATTTGTTATATAGTGTGTAT
TAATAAATGGGTTGTAGCGTTCTAGGTGTCTGTGTAACGGTCCAACTCAACCCTCAATCT
CAGTAGGACCTCACCCACGTAGAAAATAATATGACAAAATAAGGGTATACTAATAAAAAA
ACAAAAATTTTCAACAACGAAAATAAAAAAAATAAGAAAAAGAGTTTTTAAACGTAAGCG
TTGGACACGACAAGCAGTATATCATTTCAAAATTCGCAGGTGATTTTTTACGAGCGCGTG
ATTTAAAGCGTTCGGCCATTGTGACGTCACAAATCGTCGCGTAGCACGTCGTAATTCACC
TGCGAAGTTCTACGTGGAAAATTTGACCCGAAAGGTCCAGCGCGAAACTTTGAATCGCCA
TCCGTTAGCGCATTTTTGCAGCAGA
